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Exome / genome re-sequencing

Raw Illumina reads FASTQ. Exome / genome re-sequencing. Quality control (QC). Filtering. Mapping. Reference annotation. Call variants. Annotate & filter variants. Raw Illumina reads FASTQ. Quality control (QC). Filtering. Mapping. Call variants. Annotate & filter variants.

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Exome / genome re-sequencing

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  1. Raw Illumina reads FASTQ Exome / genome re-sequencing Quality control (QC) Filtering Mapping Reference annotation Call variants Annotate & filter variants

  2. Raw Illumina reads FASTQ

  3. Quality control (QC)

  4. Filtering

  5. Mapping

  6. Call variants

  7. Annotate & filter variants

  8. Reference annotation

  9. Raw Illumina reads FASTQ Genome de novo assembly Quality control (QC) Filtering Assemble draft contig Validate Assemble draft scaffold Validate Release

  10. Raw Illumina reads FASTQ

  11. Quality control (QC)

  12. Filtering

  13. Assemble draft contig

  14. Validate

  15. Assemble draft scaffold

  16. Validate

  17. Release

  18. Sample Raw Illumina RNASeq FASTQ Indexed Reference Genome FASTA RNA-Seq Quality control (QC) Filtering Mapping Estimate expression Detect differential expression

  19. Sample Raw Illumina RNASeq FASTQ

  20. Indexed Reference Genome FASTA

  21. Quality control (QC)

  22. Filtering

  23. Mapping

  24. Estimate expression

  25. Detect differential expression

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