Practical applications of HMMs : ChromHMM. Sushmita Roy Nov 5th. Chromatin organization and gene expression. http:// www.youtube.com/watch?v =eYrQ0EhVCYA. ChIP-seq to measure histone data. Adapted from Dewey lecture and Peter Park Nature Genetics Review.
Adapted from Dewey lecture and Peter Park Nature Genetics Review
Chromatin state: A specific combinations of mark values.
Important because it can be used to segment the genome into biologically
Emission parameters for state 5
Input chromatin marks
Inferred state sequences
Max posterior state
Posterior probability values of each state