Learn how to display and manipulate protein structures with Deep View. Workshop-Learn how to use Deep View molecular modeler. Protein structure viewers. RasMol ...
PowerPoint Slideshow about 'Molecular viewers and protein structure prediction' - Kelvin_Ajay
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Completing the backbone-a library of PDB entries is consulted to add carbonyl groups and amino groups. The 3-D coordinates of the carbonyl groups and amino groups come from a separate library of pentapeptide backbone fragments. These backbone fragments are fitted onto the target C alpha carbons.
Side chains are added from a table of most probable rotamers corresponding to a particular backbone conformation.