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Comprehensive Bioinformatics Platform for MALDI-TRAP Analysis

Explore the I. Bioinformatics Platform at MPI/OVGU for gel-free and gel-based MALDI-TRAP analysis. Search through NCBIall, Swissprot, metagenome, and spectral databases. Update databases, utilize BLAST, Biogas database, quantify data, cluster with PCA, and more. Use cloud computing for sequence, OMSA, MASCOT, or Pepnovo searches. Enhance scores for gel-free experiments. Incorporate CLOUD-Computing and JAVA/SQL for full customization. Access OpenLIMS, OpenMS, and ProteinScape tools for advanced analysis.

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Comprehensive Bioinformatics Platform for MALDI-TRAP Analysis

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  1. I. Bioinformatik Platform MPI/OVGU: Übersicht Input 2: Gelfrei (MALDI/TRAP) Input 1: Gelspots (MALDI/TRAP) mgf.-file mgf.-file • Suche mit X gegen: • NCBIall/Swissprot • Metagenom • Spektrendatenbank • Spotdatenbank • Suche mit X gegen: • NCBIall/Swissprot • Metagenom • Spektrendatenbank X Aktualisieren der DB  Spektren/ Spotdatenbank+ BLAST Aktualisieren der DB  Spektrendatenbank+ BLAST Biogasdatenbank Open: Quantifizierung Einbettung Datastorage Clustern/ PCA

  2. I. Bioinformatik Platform MPI/OVGU: SUCHEN X SUCHE: Standardsuche/Cloudcomputing mit Sequence, OMSA, MASCOT oder Pepnovo/BLAST (Auswahl) DB: NCBI/ Swissprot DB: Metagenome+ BLAST+ manuel BLAST+ Auswahl SUCHE: Ähnlichkeitssuche mit Spektren DB: Spektrendatenbank DB: Spotdatenbank SUCHE: Erhöhung des Scores für gelfreie Experimente

  3. I. Bioinformatik Platform MPI/OVGU: Einbettung • CLOUD-Computing+JAVA/SQL complet selber • OpenLIMS • Open MS • ProteinScape

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