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GPSA Grid Protein Sequence Analysis on the EGEE Grid

Explore the GPSA Grid Portal for Bioinformatics on EGEE3, offering protein analysis applications, sequence similarity tools like BLAST and FASTA, multiple alignment with ClustalW, and more. Stay updated on new software integration and security features. Presented by Christophe Blanchet at EGEE Conference 3.

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GPSA Grid Protein Sequence Analysis on the EGEE Grid

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  1. GPSA - Grid Protein Sequence Analysison the EGEE grid • Christophe Blanchet • Pôle BioInformatique de Lyon - PBIL • Institut de Biologie et Chimie des ProtéinesIBCP – CNRS UMR 5086Lyon-Gerland, France • Christophe.Blanchet@ibcp.fr • http://pbil.ibcp.fr/~blanchet EgEE Conference 3, demo session, 20/04/2005, Athens GPSA grid portal for Bioinformatics, EGEE3 Athens, 20/04/2005

  2. Bioinformatic Resources on EGEE(Apr 2005) • Protein analysis application • Sequence similarity: BLAST, SSEARCH, FASTA • Multiple Alignment: ClustalW, MultAlin • Protein site/signatures: PattInProt • Secondary Struct. Pred: Predator, Gor4, Simpa96 • Data • Sequence Bank: SWISSPROT, TrEMBL • Pattern/Profile bank: PROSITE GPSA grid portal for Bioinformatics, EGEE3 Athens, 20/04/2005

  3. GPSA: proteinsequencesimilarity GPSA grid portal for Bioinformatics, EGEE3 Athens, 20/04/2005

  4. GPSA Status • New bioinformatic softwares integrated: • FASTA, BLAST, Multalin. • Multiple jobs integrated to GPSA: • waiting for the multiple-job availibility of the submission process: one JDL for several jobs on same data/softwares • Local file access: • testing complient SE/CE and managing data input of the BLAST algorithm. • certificat GRID-FR • Christophe Blanchet, Rémi Mollon • Guinea pig: not all the site has the last CA cert packages (0.28) • Security • Percentage of success: 79,1 % of success GPSA grid portal for Bioinformatics, EGEE3 Athens, 20/04/2005

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