1 / 1

Comprehensive Gene Feature Analysis and Visualization Tool

This tool offers a seamless interface to analyze and visualize gene features. Users can input exon and CDS coordinates, fetch corresponding sequences from GenBank, and map CDS to genomic sequences using est2genome. It supports BED and GTF/GFF3 formats and outputs results in a uniform layout. Features include generating phylogenetic trees and customizable visual figures, where users can adjust size, shape, and color of gene features. Export options include SVG, PDF, and PNG formats for easy sharing and publication.

uta-boyle
Download Presentation

Comprehensive Gene Feature Analysis and Visualization Tool

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Input main features (coordinates of exons/CDS in genes) Features in BED Features in GTF/GFF3 GenBank Accession Number/GI Sequences (FASTA) Fetch corresponding information from GenBank Map CDS to genomic sequence by est2genome Coordinates for Exons/CDS Coordinates for CDS Input other information Features in a uniform format Other features (BED) Phylogenetic tree /Output order Figure for gene features Modification by resetting on the display , size, shape, and color of gene features Refine in a built-in SVG-edit server Export figure as SVG, PDF, or PNG

More Related