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Help Desk Update

Help Desk Update. Dave Clements Galaxy Project Emory University clements@galaxyproject.org. March 2011 GMOD Meeting 5-6 March 2011. Inputs and Outputs. Lunch will be here I think in this room. Dinner Mt Fuji, Brightleaf Square, 7:30pm tonight. Unofficial Headcount Coffee/Tea

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Help Desk Update

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  1. Help Desk Update Dave Clements Galaxy Project Emory University clements@galaxyproject.org March 2011 GMOD Meeting 5-6 March 2011

  2. Inputs and Outputs • Lunch will be here • I think in this room. • Dinner • Mt Fuji, Brightleaf Square, 7:30pm tonight. • Unofficial • Headcount • Coffee/Tea • Bathrooms • Twitter: #gmod11

  3. Software Membership Requirements • Codified in Feb 2010, following Jan 2010 meeting • Revisions discussed and adopted Fall 2010 • Version 2 Requirements: • Meets a common need • Useful over time • Configurable and Extensible • Open source license for all users • Interoperable with existing GMOD components • Commitment of support • Support mailing list that is publicly archived • Publicly accessible code repository http://gmod.org/wiki/GMOD_Membership

  4. GMOD.org and GMOD on the Web • New and improved GMOD News as part of move to OICR • GMOD Project Statistics Page • GMOD Promotion Page • Unified email archive @ Nabble

  5. GMOD Europe 2010 Report • 4 events, 4 days, 60 people • GMOD Meeting – 19 Talks • Open Microscopy Environment, InterMine, BioPivot, CpG Island and STR Annotator Plugins, GMOD RPC API, CRAWL, DAS, Cosmic GBrowse, Project Sustainability, … • BioMart and InterMine workshops • Two Satellite Meetings • Post Reference Genome Tools • Community Annotation http://gmod.org/wiki/News/GMOD_Europe_2010_Report

  6. GMOD Evo Hackathon Report • 5 days, 31 people, 8 subroups • GMatchbox • GBrowse_syn2 • JBrowse_syn • PhyloBox • GMatchbox-JBrowse-PhyloBox Integration • Natural Diversity and Phenotypes in Chado • Galaxy + HyPhy • BioPerl

  7. Satellites • Birds of a Feather / SIGs • Monday, All day, @ NESCent • Can still sign up • Topics: • GMOD Evo Hackathon Folowup - Duke Leto • Customizing and Extending JBrowse - Mitch Skinner • GMOD in the Sequencing Center - Chris Hemmerich & Dave Clements • Your idea here … http://gmod.org/wiki/Satellite_Meetings_-_GMOD_Americas_2011

  8. Courses • 2011: 5th school, 4rd year • Next week @ NESCent, North Carolina, US • 55 applications for 25 slots • InterMine and SOBA new this year. • Plus Apollo, Chado, Galaxy, GBrowse, GBrowse_syn, GFF3, JBrowse, MAKER, and Tripal • Tuition $265, < $55/day • Course sessions will become online tutorials http://gmod.org/wiki/GMOD_Courses

  9. Upcoming Events of Note • Galaxy Community Conference • May, Lunteren, The Netherlands • Arthropod Genomics Symposium • June, Kansas City, Missouri, US • Workshop on Comparative Genomics • July, Fort Collins, Colorado, US • Fall GMOD Meeting • October, Toronto, Canada • Plant and Animal Genome • January, San Diego, California, US • Biocuration 2012 / BioCreative / GMOD • April, Washington DC, United States http://gmod.org/wiki/Calendar

  10. (Help Desk) Grant Funded • Enhancing the GMOD Suite of Genome Annotation and Visualization Tools • JBrowse, GBrowse  JBrowse, Help Desk • Help Desk • JBrowse, GBrowse  JBrowse, NGS data, transcriptomics, developmental atlases, population genomic and natural diversity data, workflow and pipeline tools for processing large data sets, and software interoperability • Continue with documentation, user support, gmod.org, training, courses, outreach, annual survey

  11. GMOD Help Desk: Now Hiring http://gmod.org/wiki/News/GMOD_Helpdesk_Position_Open

  12. Acknowledgements Scott Cain Carson Holt Brian Osborne Ed Lee Danielle Wilson Stephen Ficklin Mitch Skinner Ian Holmes Phillips Lab Gos Micklem Shelley Lawson Jason Swedlow Barry Moore Alex Kalderimis Eric Stone Steve Taylor Richard Baldock Brian O’Connor Denis Tagu … Sheldon McKay Lincoln Stein Jim Hu Peter Van Buren Daniel Renfro Todd Vision Nathan Liles Maryann Martone Bill Gelbart Brenley McIntosh Chris Hemmerich Cresko Lab James Taylor LBCC Adv. Design Ben Faga Joshua Orvis Heng Li Simon McGowan Junjun Zhang … Hilmar Lapp Candace Brown Jon Auman Dan Blankenberg Dave Matthews Steve Heller John Aikman Robert Buels Richard Smith Nicole Washington Alexie Papanicolaou Josh Goodman Randy Campbell Suzi Lewis Mark Yandell Sue Brown Matt Bellgard Don Gilbert …

  13. Thanks For everything Dave Clements Galaxy Project Emory University clements@galaxyproject.org http://gmod.org/wiki/GMOD_Help_Desk

  14. Mailing List Archive(s): GMOD @ Nabble Unified search - no matter where list is hosted All active lists SF.net search < good http://gmod.org/wiki/GMOD_Mailing_Lists http://gmod.827538.n3.nabble.com/

  15. Promotion • Why? • Increased visibility  Increased adoption  More projects contributing back • Increased adoption & development  funding • How? • Cite GMOD, GMOD Components • Powered by GMOD icons • Speakers at your event • Graphics & slides for your presentations, posters • Presentation and event promotion • Brochures (GMOD project, events) • Bling! http://gmod.org/wiki/GMOD_Promotion

  16. GMOD Logo Program Logos by John Aikman's Spring 2010 Advanced Design class @ Linn-Benton Community College, Albany, Oregon, United States http://gmod.org/wiki/Spring_2010_Logo_Program

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