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How to setup a BOLD data mirror yourself?

How to setup a BOLD data mirror yourself?. Dr. Di Liu Institute of Microbiology, Chinese Academy of Sciences @Informatics pre-conference workshop. What is BOLD Mirror?. BOLD Mirror is data mirror of BOLD It is a project of iBOL WG3.2

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How to setup a BOLD data mirror yourself?

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  1. How to setup a BOLD data mirror yourself? Dr. Di Liu Institute of Microbiology, Chinese Academy of Sciences @Informatics pre-conference workshop

  2. What is BOLD Mirror? • BOLD Mirror is data mirror of BOLD • It is a project of iBOL WG3.2 • It is developed by the Institute of Microbiology, Chinese Academy of Sciences • Everyone can setup BOLD mirror and use the data locally • It will help the global distribution and the use of BOLD data

  3. What shall I do if I am interested in it? • Visit our website: http://www.boldmirror.net • Contact us: • Dr. Juncai Ma, ma@im.ac.cn • Dr. Di Liu, liud@im.ac.cn

  4. The environments for installation • Linux (we are using Ubuntu) • Apache • MySQL • PHP

  5. Files within BOLDmirror v1.1

  6. README.doc, README • boldmirror_web.zip: Files to create the web site • bold20111018.sql.gz: SQL files to create database • barcode-script.zip: Scripts for daily update. • logclient.zip: Scripts to collect the access logs • Software/, software you need to install beforehand, including Apache, MySQL, …

  7. Installation • Step 1. Create the database of boldmirror. • You can create the database with command or GUI tool • Then uncompress the SQL file, and run the sql file to create the tables and insert the data. • It will take several minutes, please wait.

  8. Installation • Step 2. Setup the WEB. • Uncompressboldmirror_web.zip, and copy the boldmirror folder to your web server document root or create the link to the boldmirror by command • “sudoln –s YOURBOLDMIRRORPATHYOURWEBSERVERDOCUMENTROOT”. • Make some configurations. • Modify file "boldmirror/system/application/config/database.php" according to your database configuration.

  9. http://Your_APACHE_URL/

  10. Installation • Step 3. Deploy the scripts for daily update • Uncompress barcode-script.zip • There are four folders in the barcode directory: conf ,data ,logs and parsefiles. • Please modify the file “conf/barcode.conf”.

  11. Installation • Use crontab for daily update • “crontab–e” • “0 1 * * * cd YOURBARCODE_BASE_DIR/parsefiles && perl barcode.pl 2>&1”

  12. Contact us at anytime when you meet problem thanks

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