'Unrooted tree' presentation slideshows

Chapter 7 Building Phylogenetic Trees

Chapter 7 Building Phylogenetic Trees. Contents. Phylogeny Phylogenetic trees How to make a phylogenetic tree from pairwise distances UPGMA method (+ an example) Neighbor-Joining method (+ an example) Comparison of methods Conclusion. Phylogeny.

953 views • 75 slides

Bioinformatics and Evolutionary Genomics Gene Trees, Gene Duplications ( I ), and Orthology

Bioinformatics and Evolutionary Genomics Gene Trees, Gene Duplications ( I ), and Orthology. Gene Trees, Gene Duplications and Orthology. Phylogenetic gene trees: how to make them. Homology: are two pieces of sequence related; Trees: when did they diverge ( how are they related)

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Phylogenetic Analysis based on two talks, by

Phylogenetic Analysis based on two talks, by. Caro-Beth Stewart, Ph.D . Department of Biological Sciences University at Albany, SUNY c.stewart@albany.edu and Tal Pupko, Ph.D. Faculty of Life Science Tel-Aviv University talp@post.tau.ac.il.

576 views • 45 slides

Dynamic Programming II

HKOI2008 Training (Advanced Group) Choi Sin Man, Kelly. Dynamic Programming II. (Powerpoint of Dynamic Programming II, HKOI Training 2005, by Liu Chi Man, cx). Review. Recurrence relation Dynamic programming State & Recurrence Formula Optimal substructure Overlapping subproblems. Outline.

585 views • 45 slides

Dynamic Programming II

HKOI2009 Training (Advanced Group). Dynamic Programming II. (Reference: Powerpoint of Dynamic Programming II, HKOI Training 2005, by Liu Chi Man, cx). Review. Recurrence relation Dynamic programming State & Recurrence Formula Optimal substructure Overlapping subproblems. Outline.

467 views • 45 slides

Phylogeny

722 views • 44 slides

Part 9 Phylogenetic Trees

Part 9 Phylogenetic Trees. Phylogeny. PHYLOGENY (coined 1866 Haeckel) the line of descent or evolutionary development of any plant or animal species the origin and evolution of a division, group or race of animals or plants. Goals. Understand evolutionary history Origin of Europeans

653 views • 40 slides

Phylogenetic Trees

Phylogenetic Trees. Phylogeny. PHYLOGENY (coined 1866 Haeckel) the line of descent or evolutionary development of any plant or animal species the origin and evolution of a division, group or race of animals or plants. Goals. Understand evolutionary history Origin of Europeans

436 views • 40 slides

Phylogeny

416 views • 32 slides

Overview of Phylogeny

1. 4. 3. 5. 2. 5. 2. 3. 1. 4. Overview of Phylogeny. Edentata (anteaters, sloths, armadillos). New World monkeys. Old World monkeys. Lagomorpha (rabbits). humans, gorilla, chimpanzee, orangutan. Triconodonts. Rodentia (mice, rats, squirrels). gibbons. Multituberculata.

418 views • 28 slides

IMPROVED TECHNIQUES FOR THE IDENTIFICATION OF PSEUDOGENES

IMPROVED TECHNIQUES FOR THE IDENTIFICATION OF PSEUDOGENES. L. Coin and R. Durbin Wellcome Trust Sanger Institute. BIOINFORMATICS 2004 Presented by: Oscar Sanchez Plazas. Outline. Problem definition Previous works on pseudogene identification Proposed method Protein domain profile (Pfam)

398 views • 23 slides

IMPROVED TECHNIQUES FOR THE IDENTIFICATION OF PSEUDOGENES

IMPROVED TECHNIQUES FOR THE IDENTIFICATION OF PSEUDOGENES. L. Coin and R. Durbin Wellcome Trust Sanger Institute. BIOINFORMATICS 2004 Presented by: Oscar Sanchez Plazas. Outline. Problem definition Previous works on pseudogene identification Proposed method Protein domain profile (Pfam)

332 views • 23 slides

Jahna Otterbacher, Dragomir Radev Computational Linguistics And Information Retrieval (CLAIR)

Modeling Document Dynamics: An Evolutionary Approach. Jahna Otterbacher, Dragomir Radev Computational Linguistics And Information Retrieval (CLAIR) {jahna, radev} @ umich.edu. What are dynamic texts?. Sets of topically related documents (news stories, Web pages, etc.) Multiple sources

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Trees & Topologies Chapter 3, Part 1

280 views • 18 slides

Analyzing Base Pair Differences Between Subjects with Significantly Different T-Cell Rate

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Analyzing Base Pair Differences Between Subjects with Significantly Different T-Cell Rate

165 views • 16 slides

Analyzing Base Pair Differences Between Subjects with Significantly Different T-Cell Rate

162 views • 16 slides

Phylogenetic Prediction Lecture II by Clarke S. Arnold March 19, 2002

Phylogenetic Prediction Lecture II by Clarke S. Arnold March 19, 2002. Outline. Comments about Trees UPGMA (Unweighted Pair Group Method with Arithmetic Mean) analysis Other uses of phylogenetic trees Conversion of Alignment Scores to distances Maximum Likelihood Approach

292 views • 15 slides