'Short read' presentation slideshows

MGM Workshop Assembly Tutorial Alicia Clum DOE Joint Genome Institute, Walnut Creek, CA

MGM Workshop Assembly Tutorial Alicia Clum DOE Joint Genome Institute, Walnut Creek, CA May 14, 2012. Contents. Vocabulary introduction Introduction to short-read genome sequencing and assembly Practical experience of short read genome assembly

1.2k views • 74 slides

Whole Genome Sequencing

697 views • 65 slides

Lecture 4. Short Read Alignment

Lecture 4. Short Read Alignment. The Chinese University of Hong Kong CSCI3220 Algorithms for Bioinformatics. Lecture outline. Massively parallel sequencing and short reads The short read alignment problem Suffix trie/tree/array Burrows-Wheeler Transform (BWT). Part 1.

961 views • 61 slides

Lecture 4. Short Read Alignment

Lecture 4. Short Read Alignment. The Chinese University of Hong Kong CSCI3220 Algorithms for Bioinformatics. Lecture outline. Massively parallel sequencing and short reads The short read alignment problem Suffix trie/tree/array Burrows-Wheeler Transform (BWT). Part 1.

609 views • 60 slides

Lecture 5. Sequence Assembly

Lecture 5. Sequence Assembly. The Chinese University of Hong Kong CSCI3220 Algorithms for Bioinformatics. Lecture outline. The sequence assembly problem Several general approaches Related graph problems Hamiltonian path Eulerian path Sequence assembly by using de Bruijn graphs. Part 1.

559 views • 55 slides

Lecture 5. Sequence Assembly

Lecture 5. Sequence Assembly. The Chinese University of Hong Kong CSCI3220 Algorithms for Bioinformatics. Lecture outline. The sequence assembly problem Several general approaches Related graph problems Hamiltonian path Eulerian path Sequence assembly by using de Bruijn graphs. Part 1.

615 views • 46 slides

Short Read Mapper

Short Read Mapper. Brian S. Lam CS124. Outline. Biological Motivation Computer Science Problem Trivial Solution Hash Index Solution Future Direction. Outline. Biological Motivation Computer Science Problem Trivial Solution Hash Index Solution Future Direction. Biological Motivation.

440 views • 34 slides