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Homology Search Tools

Homology Search Tools

Homology Search Tools. Kun-Mao Chao ( ??? ) Department of Computer Science and Information Engineering National Taiwan University, Taiwan WWW: http://www.csie.ntu.edu.tw/~kmchao. Homology Search Tools. Smith-Waterman (Smith and Waterman, 1981; Waterman and Eggert, 1987)

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651 views • 50 slides
Homology Search Tools

Homology Search Tools

Homology Search Tools. Kun-Mao Chao ( ??? ) Department of Computer Science and Information Engineering National Taiwan University, Taiwan WWW: http://www.csie.ntu.edu.tw/~kmchao. Homology Search Tools. Smith-Waterman (Smith and Waterman, 1981; Waterman and Eggert, 1987)

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507 views • 50 slides
Homology Search Tools

Homology Search Tools

Homology Search Tools. Kun-Mao Chao ( ??? ) Department of Computer Science and Information Engineering National Taiwan University, Taiwan WWW: http://www.csie.ntu.edu.tw/~kmchao. Homology Search Tools. Smith-Waterman (Smith and Waterman, 1981; Waterman and Eggert, 1987)

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502 views • 26 slides
BLAST: Basic Local Alignment Search Tool Altschul et al. J. Mol Bio. 1990.

BLAST: Basic Local Alignment Search Tool Altschul et al. J. Mol Bio. 1990.

BLAST: Basic Local Alignment Search Tool Altschul et al. J. Mol Bio. 1990. CS 466 Saurabh Sinha. Motivation. Sequence homology to a known protein suggest function of newly sequenced protein Bioinformatics task is to find homologous sequence in a database of sequences

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263 views • 26 slides
Fast Local Alignment Methods

Fast Local Alignment Methods

Fast Local Alignment Methods. Kun-Mao Chao ( ??? ) Department of Computer Science and Information Engineering National Taiwan University, Taiwan E-mail: kmchao@csie.ntu.edu.tw WWW: http://www.csie.ntu.edu.tw/~kmchao. FASTA.

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269 views • 26 slides
Homology Search Tools

Homology Search Tools

Homology Search Tools. Kun-Mao Chao ( ??? ) Department of Computer Science and Information Engineering National Taiwan University, Taiwan WWW: http://www.csie.ntu.edu.tw/~kmchao. Homology Search Tools. Smith-Waterman (Smith and Waterman, 1981; Waterman and Eggert, 1987)

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272 views • 26 slides
Class 3: Sequence similarity

Class 3: Sequence similarity

Class 3: Sequence similarity. Motivation. Same gene, or similar gene Suffix of A similar to prefix of B? Suffix of A similar to prefix of B..Z? Longest similar substring of A, B Longest similar substring of A, B..Z For each, How big? How similar?. Define alignment.

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332 views • 24 slides

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