'Read mapping' presentation slideshows

Bioinformatics Pipelines for RNA- Seq Data Analysis

Bioinformatics Pipelines for RNA- Seq Data Analysis. Ion M ? ndoiu and Sahar Al Seesi Computer Science & Engineering Department University of Connecticut. BIBM 2011 Tutorial. Outline. Background RNA- Seq read mapping Variant detection and genotyping from RNA- Seq reads

1.54k views • 112 slides

Next-generation sequencing: informatics & software aspects

Next-generation sequencing: informatics & software aspects. Gabor T. Marth Boston College Biology Department. Next-gen data. Read length. 20-60 (variable). 25-50 (fixed). 25-70 (fixed). ~200-450 (variable). 400. 100. 200. 300. 0. read length [bp]. Paired fragment-end reads.

841 views • 74 slides

Next-generation sequencing: the informatics angle

Next-generation sequencing: the informatics angle. Gabor T. Marth Boston College Biology Department. Next-generation sequencing. Illumina, AB/SOLiD short-read sequencers. 10 Gb. (5-15Gb in 25-70 bp reads). 1 Gb. 454 pyrosequencer. (100-400 Mb in 200-450 bp reads).

556 views • 55 slides

678 views • 48 slides

Informatics challenges and computer tools for sequencing 1000s of human genomes

566 views • 41 slides

Variation Detections and De novo Assemblies from Next-gen Data

531 views • 40 slides

Brudno lab: A WHIRLWIND TOUR

Brudno lab: A WHIRLWIND TOUR. Marc Fiume Department of Computer Science University of Toronto. 1. what we do, our tools 2. Savant Genome Browser. Outline. WHAT WE DO. main focus: genomic analysis using output from high-throughput sequencing (HTS) machines

393 views • 25 slides

Repetitive DNA and next-generation sequencing: computational challenges and solutions

Repetitive DNA and next-generation sequencing: computational challenges and solutions. Todd J. Treangen, Steven L. Salzberg Nature Reviews Genetics 13, 36-46 (January 2012 ) doi:10.1038/nrg3117. Speaker: ??? , ??? Date: 2012.06.04. Outline. Abstract Genome resequencing projects

343 views • 20 slides

SIGNAL PROCESSING FOR NEXT-GEN SEQUENCING DATA

Peaks. DNAse I- seq. CHIP- seq. SIGNAL PROCESSING FOR NEXT-GEN SEQUENCING DATA. Gene models. RNA- seq. Binding sites. RIP/CLIP- seq. FAIRE- seq. Transcripts. The Power of Next-Gen Sequencing. Chromosome Conformation Capture. + More Experiments. DNA Genome Sequencing

197 views • 9 slides