'Protein secondary structure' presentation slideshows

Seq. Alignment, Struc. Alignment, Threading

Seq. Alignment, Struc. Alignment, Threading. Core. Mail Servers and Web Forms. Extra. Illustration Credits: D Frishman handout. Additional Features of DNA sequences in Genomes. Gene finding. genome. mRNA. composition of codons, nts Splice site finding. Genetic Code. Extra. CAI.

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Protein Secondary Structure

Protein Secondary Structure. 1958: Kendrew Solves the Structure of Myoglobin.

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Protein structural element

Protein structural element. Yun-Ru (Ruby) Chen ??? Ph.D. The Genomics Research Center (office at 7th floor) yrchen@gate.sinica.edu.tw 2789-9930 ext 355. outline. Atom interaction and bonding Amino acid and peptide bond Secondary structure Tertiary structure Quantiary structure

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Protein structure

Protein structure. Primary structure, summary. Amino acids joined together by peptide bonds Order of amino acids determines structure Properties of peptide bonds: Planar Rotation around C ? Steric hindrance. Secondary structure. Protein Secondary Structure. Regular repeating structure

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Chap. 4A The Three-dimensional Structure of Proteins

Chap. 4A The Three-dimensional Structure of Proteins. Topics Overview of Protein Structure Protein Secondary Structure Protein Tertiary and Quaternary Structure Protein Denaturation and Folding. Fig. 4-1. Structure of the enzyme chymotrypsin, a globular protein.

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EXPLORING PROTEIN STRUCTURE

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EXPLORING PROTEIN STRUCTURE & FUNCTION

EXPLORING PROTEIN STRUCTURE & FUNCTION. Proteins. Make up about 15% of the cell Have many functions in the cell Enzymes Structural Transport Motor Storage Signaling Receptors Gene regulation Special functions. A protein hormone which helps to regulate your blood sugar levels.

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THE BASIS OF LIFE

THE BASIS OF LIFE. Matter consists of chemical elements in pure form and in combinations called compounds An element is a substance that cannot be broken down to other substances by chemical reactions

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EXPLORING PROTEIN STRUCTURE

EXPLORING PROTEIN STRUCTURE. A teaching tool for introducing students to protein structure. The final slide contains links to the files and programs students need to view proteins using Cn3D. Save this Power Point to your desktop prior to beginning the show.

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EXPLORING PROTEIN STRUCTURE

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EECS 800 Research Seminar Mining Biological Data

EECS 800 Research Seminar Mining Biological Data. Instructor: Luke Huan Fall, 2006. Lys. Lys. Gly. Gly. Leu. Val. Ala. His. Cartoon. Space filling. Oxygen Nitrogen Carbon Sulfur. Ribbon. Surface. Introduction. Protein A sequence from 20 amino acids

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EECS 800 Research Seminar Mining Biological Data

EECS 800 Research Seminar Mining Biological Data. Instructor: Luke Huan Fall, 2006. Lys. Lys. Gly. Gly. Leu. Val. Ala. His. Cartoon. Space filling. Oxygen Nitrogen Carbon Sulfur. Ribbon. Surface. Introduction. Protein A sequence from 20 amino acids

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Protein Secondary Structure Prediction Based on Position-specific Scoring Matrices

Protein Secondary Structure Prediction Based on Position-specific Scoring Matrices. Yan Liu Sep 29, 2003. Protein Secondary Structure. Dictionary of Secondary Structure Prediction (DSSP) based on hydrogen bonding patterns and geometrical constraints 7 DSSP labels for PSS:

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Proteins

Proteins. R. R. O. O. H. H. N. C. C. N. C. C. H. H. OH. H. H. OH. Draw an explanation of how the above amino acids will join together. You should circle what will be removed and then draw the product .

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A Protein Interface

A Protein Interface. Protein Folding. Protein. tRNA. Ribozome. mRNA. http://www.wehi.edu.au/education/wehi-tv/dna/Translation.mov. acetylcholine esterase. Binding Site (Negative). Acetylcholine (positive). http://www.scripps.edu/mb/goodsell/interface/interface_images.

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Absorption Spectroscopy

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protein domain prediction

Bioinformatics has become an important technique applied in many aspects of biology, such as genetics, genomics, system biology, and structural biology. It plays a pivotal role in the analysis of gene and protein expression and regulation. One goal bioinformatics pursue is protein structure prediction, which is highly important in biotechnology and drug design. In structural biology, bioinformatics finds wide applications in the simulation and modeling of DNA, RNA, proteins as well as biomolecular interactions.

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1. Aims of the Project

Sequence State Features. Hydrophobicity Features. Neighboring Features. Basic Amino Acid Features. 88%. 75%. 60%. 27%. Application of Conditional Random Fields In Bioinformatics Wei Liu and Sanjay Chawla School of Information Technologies, the University of Sydney.

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Background

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