'Profile hmms' presentation slideshows

Hidden Markov Models

Hidden Markov Models. Fundamentals and applications to bioinformatics. Markov Chains. Given a finite discrete set S of possible states, a Markov chain process occupies one of these states at each unit of time. The process either stays in the same state or moves to some other state in S.

594 views • 40 slides

Profile HMMs

Profile HMMs. Biology 162 Computational Genetics Todd Vision 16 Sep 2004. Outline. Profile HMMs generate MSAs States and transitions for Matches, Insertions, Deletions, Silent and Flanking states Statistics Null model, E values Training

472 views • 33 slides

Hidden Markov Models in Bioinformatics

886 views • 32 slides

Introduction to Bioinformatics: Lecture XIII Profile and Other Hidden Markov Models

313 views • 24 slides

Profile Hidden Markov Models

Profile Hidden Markov Models. Bioinformatics Fall-2004 Dr Webb Miller and Dr Claude Depamphilis Dhiraj Joshi Department of Computer Science and Engineering The Pennsylvania State University. Outline. Introduction to HMMs Profile HMMs

407 views • 23 slides

Ch5 Profile HMMs for sequence families

Ch5 Profile HMMs for sequence families. To identify whether a sequence belongs to a family and align it to the other members. Pairwise searching with any of the members may not find sequences distantly related to the ones you have already.

186 views • 18 slides

CSE182-L10

CSE182-L10. HMM applications. Probability of being in specific states. What is the probability that we were in state k at step I? Pr[All paths that passed through state k at step I, and emitted x] Pr[All paths that emitted x]. The Forward Algorithm.

271 views • 17 slides

CSE182-L10

CSE182-L10. HMM applications. Probability of being in specific states. What is the probability that we were in state k at step I? Pr[All paths that passed through state k at step I, and emitted x] Pr[All paths that emitted x]. The Forward Algorithm.

254 views • 17 slides

Applications of Hidden Markov Models

316 views • 16 slides