'Pfam' presentation slideshows

Developing and Using Special Purpose Hidden Markov Model Databases

962 views • 81 slides

Protein Database

Protein Database. David Shiuan Department of Life Science Institute of Biotechnology Interdisciplinary Program of Bioinformatics National Dong Hwa University. Proteome Bioinformatics/Databases. 1. Protein sequence databases

1.86k views • 76 slides

Pfam a resource for remote homology domain identification

Pfam a resource for remote homology domain identification. http:// pfam.xfam.org. Finn et al NAR 2014. Building families. Identify target. Abandon. Build SEED MSA of representative members. Build Profile-HMM. Search UniProtKB. Abandon. QCs and fix Significance thresholds. Annotate.

688 views • 54 slides

Alex Bateman , Rob Finn, Jaina Mistry, John Tate

Alex Bateman , Rob Finn, Jaina Mistry, John Tate William Mifsud, Matthew Bashton, Nicola Kerrison, David Waterfield, Simon Moxon, Lachlan Coin, Dave Studholme, Corin Yeats, Ewan Birney, Kevin Howe, Nina Mian, Lorenzo Cerrutti, Sam Griffiths-Jones, Mhairi Marshall,

510 views • 39 slides

Pfam & DAS

282 views • 15 slides

Pfam: multiple sequence alignments and HMM-profiles of protein domains

Pfam: multiple sequence alignments and HMM-profiles of protein domains. Xianhui Li 03-02-2004. Outline. What is Pfam? What is a Hidden Markove model (the methodology underlying Pfam)? How to use Pfam and sample output. pfam.

163 views • 13 slides