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Gapped BLAST and PSI-BLAST ? a new generation of protein database search programs

Gapped BLAST and PSI-BLAST ? a new generation of protein database search programs

Gapped BLAST and PSI-BLAST ? a new generation of protein database search programs. Presented by ??? ??? ??? ???. Outline. BLAST 1.0 BLAST 2.0 The two-hit method Gapped alignment PSI-BLAST Performance evaluation Discussion and Conclusion NCBI website. Statistical preliminaries.

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1.32k views • 86 slides
Gapped BLAST and PSI-BLAST ? a new generation of protein database search programs

Gapped BLAST and PSI-BLAST ? a new generation of protein database search programs

Gapped BLAST and PSI-BLAST ? a new generation of protein database search programs. Presented by ??? ??? ??? ???. Outline. BLAST 1.0 BLAST 2.0 The two-hit method Gapped alignment PSI-BLAST Performance evaluation Discussion and Conclusion NCBI website. Statistical preliminaries.

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1.32k views • 86 slides
Homology Search Tools

Homology Search Tools

Homology Search Tools. Kun-Mao Chao ( ??? ) Department of Computer Science and Information Engineering National Taiwan University, Taiwan WWW: http://www.csie.ntu.edu.tw/~kmchao. Homology Search Tools. Smith-Waterman (Smith and Waterman, 1981; Waterman and Eggert, 1987)

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437 views • 26 slides
Homology Search Tools

Homology Search Tools

Homology Search Tools. Kun-Mao Chao ( ??? ) Department of Computer Science and Information Engineering National Taiwan University, Taiwan WWW: http://www.csie.ntu.edu.tw/~kmchao. Homology Search Tools. Smith-Waterman (Smith and Waterman, 1981; Waterman and Eggert, 1987)

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396 views • 26 slides
Sequence Alignment

Sequence Alignment

Sequence Alignment. Kun-Mao Chao ( ??? ) Department of Computer Science and Information Engineering National Taiwan University, Taiwan E-mail: kmchao@csie.ntu.edu.tw WWW: http://www.csie.ntu.edu.tw/~kmchao. k best local alignments.

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323 views • 14 slides

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