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From calling bases to calling variants: Experiences with Illumina data

From calling bases to calling variants: Experiences with Illumina data

From calling bases to calling variants: Experiences with Illumina data. Gerton Lunter Wellcome Trust Centre for Human Genetics. This talk. Refresher : Illumina sequencing QC What can go wrong Useful QC statistics Read mapping Comparison of popular read mappers Stampy

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595 views • 38 slides
From calling bases to calling variants: Experiences with Illumina data

From calling bases to calling variants: Experiences with Illumina data

From calling bases to calling variants: Experiences with Illumina data. Gerton Lunter Wellcome Trust Centre for Human Genetics. This talk. Refresher : Illumina sequencing QC What can go wrong Useful QC statistics Read mapping Comparison of popular read mappers Stampy

★ ★ ★ ★ ★

528 views • 38 slides
From calling bases to calling variants: Experiences with Illumina data

From calling bases to calling variants: Experiences with Illumina data

From calling bases to calling variants: Experiences with Illumina data. Gerton Lunter Wellcome Trust Centre for Human Genetics. This talk. Refresher : Illumina sequencing QC What can go wrong Useful QC statistics Read mapping Comparison of popular read mappers Stampy

★ ★ ★ ★ ★

385 views • 38 slides
Detection of nTARs in the mouse intestinal transcriptome

Detection of nTARs in the mouse intestinal transcriptome

Detection of nTARs in the mouse intestinal transcriptome. BMC Genomics, 2011. nTARs - workflow ( n ovel t ranscriptional a ctive r egion). covered regions. m apping (GEM). yes. yes. yes. discard hit. known exon?. no. discard hit. bad. quality check. no. no. OK.

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214 views • 11 slides

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