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Tools For HTS Analysis

Tools For HTS Analysis

Tools For HTS Analysis. Michael Brudno and Marc Fiume Department of Computer Science University of Toronto. Outline. Lab focus Our tools SHRiMP : read mapper VARiD : SNP and indel finder Savant : genome browser Discussion. Our Tools. READ MAPPING ( SHRiMP ). ASSEMBLY (UNNAMED).

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600 views • 50 slides
VARiD: A Variation Detection Framework for Color-space and Letter-space platforms

VARiD: A Variation Detection Framework for Color-space and Letter-space platforms

VARiD: A Variation Detection Framework for Color-space and Letter-space platforms. By A.V. Dalca, S. M. Rumble, S. Levy, M. Brudno. Presented by Velian Pandeliev. VARiD Overview. Purpose: Variation Detection (SNP, indel) Pitch: First to use both colour-space and letter-space data

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466 views • 33 slides
VARiD: A Variation Detection Framework for Color-space and Letter-space platforms

VARiD: A Variation Detection Framework for Color-space and Letter-space platforms

VARiD: A Variation Detection Framework for Color-space and Letter-space platforms. By A.V. Dalca, S. M. Rumble, S. Levy, M. Brudno. Presented by Velian Pandeliev. VARiD Overview. Purpose: Variation Detection (SNP, indel) Pitch: First to use both colour-space and letter-space data

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443 views • 33 slides
VARiD : Variation Detection in Color-Space and Letter-Space

VARiD : Variation Detection in Color-Space and Letter-Space

VARiD : Variation Detection in Color-Space and Letter-Space. Adrian Dalca 1 and Michael Brudno 1,2. University of Toronto. 1 Department of Computer Science 2 Banting & Best Department of Medical Research. Motivation we have different Color-space and Letter-space platforms

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404 views • 29 slides
VARiD : Variation Detection in Color-Space and Letter-Space

VARiD : Variation Detection in Color-Space and Letter-Space

VARiD : Variation Detection in Color-Space and Letter-Space Adrian Dalca 1 and Michael Brudno 1,2 1 Department of Computer Science 2 Banting & Best Department of Medical Research University of Toronto. Methods.

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142 views • 1 slides

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