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COT 6930 HPC and Bioinformatics Pairwise Sequence Alignment (PSA)

COT 6930 HPC and Bioinformatics Pairwise Sequence Alignment (PSA). Xingquan Zhu Dept. of Computer Science and Engineering. Outline. Dynamic Programming Dot Matrix Plot FASTA BLAST. Difficulty of PSA. Consider two sequences of length n Number of possible global alignments

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COT 6930 HPC and Bioinformatics Pairwise Sequence Alignment (PSA)