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Combinatorial Pattern Matching

Combinatorial Pattern Matching

Combinatorial Pattern Matching. Outline. Hash Tables Repeat Finding Exact Pattern Matching Keyword Trees Suffix Trees Heuristic Similarity Search Algorithms Approximate String Matching Filtration Comparing a Sequence Against a Database Algorithm behind BLAST Statistics behind BLAST

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1.23k views • 101 slides
Combinational Pattern Matching

Combinational Pattern Matching

Combinational Pattern Matching. Shashank Kadaveru. Introduction. In Motif Finding problem, no particular pattern is given to search for. We infer it from the sample. In Combinational Pattern Matching, we look for exact or appropriate occurrences of given patterns in a long text. .

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618 views • 45 slides
Bioinformatics Algorithms and Data Structures

Bioinformatics Algorithms and Data Structures

Bioinformatics Algorithms and Data Structures. Chapter 12.3: Exclusion Methods Lecturer: Dr. Rose Slides by: Dr. Rose February 20, 2003. Overview. Exclusion methods: fast expected time O ( m ) Partition approaches: BYP algorithm Aho-Corasick exact matching algorithm Keyword trees

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447 views • 44 slides
Hugh E. Williams and Justin Zobel IEEE Transactions on knowledge and data engineering

Hugh E. Williams and Justin Zobel IEEE Transactions on knowledge and data engineering

Indexing and Retrieval for Genomic Databases. Hugh E. Williams and Justin Zobel IEEE Transactions on knowledge and data engineering Vol. 14, No. 1, January/February 2002. Presented by Jitimon Keinduangjun. Agenda. 1. Introduction 2. What are the problems? 3. What are other people doing?

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374 views • 23 slides

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