'Gene id' presentation slideshows

Havana, Cuba, 21.11.2003

Mining the functional genomics data III Data integration: Gene Ontology, PPI, URLMAP Jaak Vilo vilo@egeen.ee. Havana, Cuba, 21.11.2003. Components of Expression Profiler http://ep.ebi.ac.uk/. External data, tools pathways, function, etc. EP:PPI Prot-Prot ia. EP:GO GeneOntology.

973 views • 89 slides

Bioinformatics I

Bioinformatics I. Date: October 4, 2014. To have an understanding of: Sequence analysis Genome assembly and annotation Publicly available molecular biology and genetic databases Identification of sequence similarity Defining function of biological sequences

549 views • 44 slides

An Introduction to Databases

An Introduction to Databases. Dr Stephen Swift The Intelligent Data Analysis Group Brunel University. An Introduction to Databases. Databases The Parts of a Database A Brief Description of SQL Examples Using Microsoft Access. What is a Database? (1).

572 views • 43 slides

Metadata and Annotation with Bioconductor

566 views • 41 slides

BioMart Query Network

BioMart Query Network. Arek Kasprzyk European Bioinformatics Institute 8 January 2005. Biological databases. Distributed Different format Different focus Different release schedule Scalability factor. BioMart. Retrieval. MartExplorer. MartShell. MartView. JAVA. Perl. BioMart API.

515 views • 40 slides

Data Warehousing Lifecycle

Data Warehousing Lifecycle. Conceptual modeling: System requirements, data sources and warehousing activities. Logical design: Data flow from sources to DW, composition and semantics of activities. Application development: DW interfaces, OLAP

551 views • 38 slides

Data Mining with BioMart

Data Mining with BioMart. www.ensembl.org/biomart/martview www.biomart.org/biomart/martview. What is BioMart?. A data export tool A quick table generator A web interface to mine Ensembl data. BioMart- Data mining.

522 views • 35 slides

BIOINFORMATICS OVERVIEW Premise of Bioinformatics Gene sequences determine biological function

BIOINFORMATICS OVERVIEW Premise of Bioinformatics Gene sequences determine biological function genomic DNA ? Amino Acid ? Proteins ? Function Similar composition ? similar Function? DNA sequences Amino Acid sequences protein 3D structure Predicting protein function Designer drugs

361 views • 35 slides

ECDB (ENDOMETRIAL CANCER GENE DATABASE)

ECDB (ENDOMETRIAL CANCER GENE DATABASE) The first ever database that catalogues the genes implicated in endometrial cancer one of the major gynecological cancer . ECDB provides a user-friendly interface.

332 views • 32 slides

Chemical name interpretations & Molecular time lines -

433 views • 31 slides

Microarray experiments: Database and Analysis Tools.

Microarray experiments: Database and Analysis Tools. Kate Milova cDNA Microarray Facility March 24, 2005. Outline. Microarray platforms and services at AECOM: cDNA Long Oligo Affymetrix Database (cDNA & Long Oligo) structure and content: Printing information Chip layout

399 views • 29 slides

P ro I nt Finder to Search Protein Interactions

P ro I nt Finder to Search Protein Interactions. Shwe S. Lin Mentor: Matteo Pellegrini, UCLA. Outlines. Project overview Purpose Background My part Algorithms Tool used Examples Acknowledgments References. Project Overview.

345 views • 24 slides

biomart/

540 views • 23 slides

Midterm Project

195 views • 19 slides

Around the triangle

Around the triangle. arrays. Chris Evelo BiGCaT Bioinformatics Maastricht May 19 2004. paths. QTLs. Involve information about chromosome locations of traits in expression analyses. Around the triangle. How to combine expression data with known pathways and

247 views • 17 slides

Enter Gene Name

Enter Gene Name. Click on Gene ID. Click on HPRD ID for Ontology Details. Click on Homologene ID for Homologous Details. Click on this for References and Pubmed IDs. Click on this for Sequences and Structures. Click on mRNA ID for Sequence Details.

231 views • 16 slides

autoconf and Biological Annotation Tool (BAT)

autoconf and Biological Annotation Tool (BAT). Bob Zimmermann 6 September 2006. First, a Bit of a Digression (Look Familiar?). checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... no checking for mawk... no

213 views • 14 slides

caFE Server

caFE Server. Siteman Cancer Center. Introduction. Annotate probes on microarrays using publicly available biomedical databases Automatically update annotations on a regular basis Web-based and API based query search Uses caCORE SDK (version 1.0.3) generated code

131 views • 6 slides

How to use NCBI Batch Enterz

187 views • 4 slides

Clinical

RU_ID: NUMBER. RANDOM_RU_ID: VARCHAR2(20). IU_ID: VARCHAR2(20). NIH_NIDA_ID: VARCHAR2(20). TISH_FIELD_ID: VARCHAR2(25). HOSPITAL_ID: VARCHAR2(25). PHARMGKB_ID: VARCHAR2(25). SSN: VARCHAR2(11). BIRTHDATE: DATE. PATIENT_FLAG: VARCHAR2(3). FAMILY_PEDIGREE_NUMBER: NUMBER(8).

115 views • 1 slides