'Forward algorithm' presentation slideshows

Hidden Markov Models Part 2: Algorithms

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Hidden Markov Models

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CS5263 Bioinformatics

CS5263 Bioinformatics. Lecture 12: Hidden Markov Models and applications. Project ideas. Implement an HMM including Viterbi decoding, posterior decoding and Baum-Welch learning Construct a model Generate sequences with the model Given labels, estimate parameters Given parameters, decode

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Multiple Alignment by profile HMM training and Phylogenetic Trees

Multiple Alignment by profile HMM training and Phylogenetic Trees. Elze de Groot & Anastacia Berdnikova. Topics. Multiple alignment with known HMM HMM training from unaligned sequences Avoiding local maxima Simulated annealing Noise injection Stochastic sampling traceback algorithm

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Synthesis Generations

Synthesis Generations. First Generation Evaluation Perfect speech could be generated Required perfect setting of the parameters Human intervention put supper limits on the achievable quality Second Generation Memorize pre-stored waveforms for concatenation

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Part of Speech Tagging & Hidden Markov Models

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Hidden Markov Models

Hidden Markov Models. BMI/CS 776 www.biostat.wisc.edu/~craven/776.html Mark Craven craven@biostat.wisc.edu March 2002. Announcements. talks this week Quantitative Genetics in the age of Genomics Bruce Walsh, Univ. of Arizona 4pm 3/11, 184 Russell Labs

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Hidden Markov Model

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Summary of Chapter 7:

Hidden Markov Models Supplement to the Probabilistic Graphical Models Course 2009 School of Computer Science and Engineering Seoul National University. Summary of Chapter 7: P. Baldi and S. Brunak, Bioinformatics: The Machine Learning Approach, MIT Press, 1998. Outline. Introduction

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Hidden Markov Models

Hidden Markov Models. Hsin-min Wang whm@iis.sinica.edu.tw. References: L. R. Rabiner and B. H. Juang, (1993) Fundamentals of Speech Recognition, Chapter 6 X. Huang et. al., (2001) Spoken Language Processing, Chapter 8

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CS 188: Artificial Intelligence Fall 2007

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Hidden Markov Models Chapter 11

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Hidden Markov Models Chapter 11

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Hidden Markov Model in Automatic Speech Recognition

Hidden Markov Model in Automatic Speech Recognition. Z. Fodroczi Pazmany Peter Catholic. Univ. Outline. Discrete Markov process Hidden Markov Model Vitterbi algorithm Forward algorithm Parameter estimation Type of them HMMs in ASR Systems Popular models State of the art and limitation.

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Multiple alignment using hidden Markove models

Multiple alignment using hidden Markove models. November 21, 2001 Kim Hye Jin Intelligent Multimedia Lab marisan@postech.ac.kr. Outline. Introduction Methods and algorithm Result Discussion. IM lab. Introduction| why HMM. Introduction. Why HMM?

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Hidden Markov Models

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CISC 667 Intro to Bioinformatics (Fall 2005) Hidden Markov Models (II)

CISC 667 Intro to Bioinformatics (Fall 2005) Hidden Markov Models (II). The model likelihood: Forward algorithm, backward algorithm Posterior decoding. 0.70. 0.65. A: .170 C: .368 G: .274 T: .188. A: .372 C: .198 G: .112 T: .338. 0.35. 0.30. +. ?.

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(0.8)(0.4)=0.32

A trellis for the Forward algorithm. H 1. H 1. H 1. start 0. end. C 2. C 2. C 2. 3. 1. 3. 0.32. 0.0464. 0.021632. (0.7)(0.2)(0.32)=0.0448. (0.7)(0.4)(0.0464)=0.12992. +. +. (0.8)(0.4)=0.32. (0.4)(0.2)(0.02)=0.0016. (0.4)(0.4)(0.054)=0.00864. (0.3)(0.5)(0.32)=0.048.

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1 . Wheeler, R.E. Notes on View Camera Geometry. 2003, 55. bobwheeler/photo/ViewCam.pdf.

Modelling Spatial Video as part of a GIS Video-Analysis Framework Paul Lewis. Introduction. Viewpoint Implementation.

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HMM structure:

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