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Coalescence

Coalescence

Coalescence. DNA Replication. DNA Coalescence. A coalescent event occurs when two lineages of DNA molecules merge back into a single DNA molecule at some time in the past. Gene Tree ( all copies of homologous DNA coalesce to a common ancestral molecule).

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804 views • 55 slides
CSE280b: Population Genetics

CSE280b: Population Genetics

CSE280b: Population Genetics. Vineet Bafna/Pavel Pevzner. www.cse.ucsd.edu/classes/sp05/cse291. Review. Hardy Weinberg Equilibrium Linkage Equlibrium. Recombination and Linkage Equilibrium.

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491 views • 49 slides
CSE280b: Population Genetics

CSE280b: Population Genetics

CSE280b: Population Genetics. Vineet Bafna/Pavel Pevzner. www.cse.ucsd.edu/classes/sp05/cse291. Simulating population data. Generate a coalescent (Topology + Branch lengths) For each branch length, drop mutations with rate ? Generate sequence data

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531 views • 46 slides
The 1983 Kreitman Data (M. Kreitman 1983 Nature) from Hartl & Clark, 1997

The 1983 Kreitman Data (M. Kreitman 1983 Nature) from Hartl & Clark, 1997

The 1983 Kreitman Data (M. Kreitman 1983 Nature) from Hartl & Clark, 1997. 11 alleles 3200 bp long. 43 segregating sites (columns with variation). 1 amino replacement event 1 insertion-deletion (indel). Coalescent Theory in Biology

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628 views • 41 slides
Coalescent Module- Faro July 26th-28th 04 coalescent .dk

Coalescent Module- Faro July 26th-28th 04 coalescent .dk

Coalescent Module- Faro July 26th-28th 04 www.coalescent .dk. Monday H: The Basic Coalescent W: Forest Fire W : The Coalescent + History, Geography & Selection H : The Coalescent with Recombination Tuesday H: Recombination cont. W: The Coalescent & Combinatorics

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388 views • 37 slides
Extensions to Basic Coalescent Chapter 4, Part 1

Extensions to Basic Coalescent Chapter 4, Part 1

Extensions to Basic Coalescent Chapter 4, Part 1. Extension 1. One of the assumptions of basic coalescent (Wright-Fisher) model: Population size is constant We will relax this assumption. Outline. Intuition behind extension Formal definition of the extended model

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369 views • 25 slides
Genealogies I: Introduction to Coalescent Theory

Genealogies I: Introduction to Coalescent Theory

Genealogies I: Introduction to Coalescent Theory. Jon Wilkins Santa Fe Institute wilkins@santafe.edu Beijing CSSS 2008. Ingredients of Natural Selection. Heritable variation Differential reproductive success Causal connection between the two. Population Genetics.

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284 views • 23 slides
Coalescent evaluation

Coalescent evaluation

Coalescent evaluation. Agenda. Legislation Coalescents in LA Evaluation Results Discussion. Legislation. LA Only Mexico has standards for VOC, but it is not in place. Brazil Standards are under discussion in Brazilian Coatings Manufacturing Association (ABRAFATI).

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124 views • 12 slides

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