'Blast program' presentation slideshows

Having a BLAST

BLAST algorithms. Having a BLAST. MLW2013, 2011. BiGCaT bioinformatics. Topics of this lecture. Introduction to BLAST Details on the BLAST algorithm Performing a BLAST Pitfalls Advanced BLAST PSI-BLAST PHI-BLAST. Introduction to BLAST. History of BLAST. Local alignment:

1.73k views • 70 slides

Lecture 11:

727 views • 61 slides

Bioinformatics, Translational Bioinformatics, Personalized Medicine

Bioinformatics, Translational Bioinformatics, Personalized Medicine. Uma Chandran, MSIS, PhD Department of Biomedical Informatics University of Pittsburgh chandran@pitt.edu 412-648-9326 07/17/2013. Outline of lecture. What is Bioinformatics ? Examples of bioinformatics Past to present

1.44k views • 58 slides

Four components to a BLAST search

388 views • 27 slides

BLAST

BLAST. Objectives. Gain familiarity with sequence searches and comparisons via web-based BLAST To understand the BLAST algorithm To understand the principles of BLAST scoring and BLAST statistics To understand scoring matrices To become aware of other BLAST services and applications. BLAST.

1.4k views • 26 slides

Parsing BLAST output

498 views • 24 slides

Tutorial 4 Comparing Protein Sequences

Tutorial 4 Comparing Protein Sequences. Intro to Bioinformatics. Amino acids were not born equally. Comparing Protein Sequences. Substitution Matrices PAM - Point Accepted Mutations BLOSUM - Blocks Substitution Matrix Advance comparison tools Psi-BLAST Phi-BLAST. Substitution Matrix.

634 views • 22 slides

Using BLAST options to refine a search

241 views • 13 slides

Using BLAST options to refine a search

131 views • 13 slides