'Bio seq' presentation slideshows

Wrapping up

418 views • 31 slides

BioRuby and the KEGG API

BioRuby and the KEGG API. Toshiaki Katayama k@bioruby.org Bioinformatics center, Kyoto U., Japan. Use the source!. What is BioRuby?. Yet another BioPerl written in Ruby since Nov 2000 Developed in Japan includes support for Japanese resources like KEGG. So, what is Ruby?.

360 views • 22 slides

Bioinformatica BioPerl

301 views • 16 slides

Generic Feature Database

Generic Feature Database. A Simple Scheme for Feature Storage. Shawn Hoon Fugu Informatics Group Institute of Molecular and Cell Biology. Associated Gene Family. Splicing Enhancer/Repressor Elements. Gene. Transcript. Protein Sequence. Exon. Genomic Sequence. Promoter Elements. Trees

199 views • 11 slides

BioPerl

BioPerl. cpan. Open a terminal and type / bin/su - start "cpan", accept all defaults install Bio:: Graphics. use Bio::Seq; use Bio::SeqIO; # create a sequence object of some DNA my $seq = Bio::Seq->new( -id => 'testseq', -seq => 'CATGTAGATAG');

235 views • 10 slides

Python study

Python study. 4 th day Modules. Homework check!. Modules. What is the module? Group of functions, but is not built in default python Have to import to use. Modules. Import module Ex) i mport sys i mport os from Bio.Seq import Seq. Modules. sys.argv [n] Setting argument

199 views • 7 slides

Introduction to Perl

Introduction to Perl. The Perl programming language is: A scripting language Uses C-style formatting Very good at manipulating strings Object-oriented As of Perl 5 Open source Available from www.perl.org Available for most platforms Great portability. Perl Formatting.

280 views • 5 slides