'Base quality' presentation slideshows

Next-generation sequencing: informatics & software aspects

Next-generation sequencing: informatics & software aspects. Gabor T. Marth Boston College Biology Department. Next-gen data. Read length. 20-60 (variable). 25-50 (fixed). 25-70 (fixed). ~200-450 (variable). 400. 100. 200. 300. 0. read length [bp]. Paired fragment-end reads.

840 views • 74 slides

Introduction to NGS

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The 1000 Genomes Project Tutorial

The 1000 Genomes Project Tutorial. ICHG 2011 Montreal, Quebec, Canada October 13, 2011. Intro. International project to construct a foundational data set for human genetics Discover virtually all common human variations by investigating many genomes at the base pair level

552 views • 30 slides

Transcriptome Assembly and Quantification from Ion Torrent RNA-Seq Data

Transcriptome Assembly and Quantification from Ion Torrent RNA-Seq Data. Alex Zelikovsky Department of Computer Science Georgia State University. Joint work with Serghei Mangul, Sahar Al Seesi, Adrian Caciula, Dumitru Brinza , Ion Mandoiu. Advances in Next Generation Sequencing.

539 views • 29 slides

264 views • 16 slides

Presented by: Xia Li

SeqMap : mapping massive amount of oligonucleotides to the genome Hui Jiang et al. Bioinformatics (2008) 24: 2395-2396 The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing Nathan Clement et al. Bioinformatics (2010) 26: 38-45 .

211 views • 12 slides

Detection of nTARs in the mouse intestinal transcriptome

Detection of nTARs in the mouse intestinal transcriptome. BMC Genomics, 2011. nTARs - workflow ( n ovel t ranscriptional a ctive r egion). covered regions. m apping (GEM). yes. yes. yes. discard hit. known exon?. no. discard hit. bad. quality check. no. no. OK.

212 views • 11 slides