'Bad character rule' presentation slideshows

Chap 3 String Matching

Chap 3 String Matching. String Matching Problem. A classical and important problem Searching engines (like Goole and Openfind) Database (GenBank). A Brute-Force Algorithm. Two Phases. http://www-igm.univ-mlv.fr/~lecroq/string/. Two Phases.

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CS5263 Bioinformatics

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CS5263 Bioinformatics

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CS5263 Bioinformatics

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Exact String Search

Exact String Search. Lecture 7: September 22, 2005 Algorithms in Biosequence Analysis Nathan Edwards - Fall, 2005. Boyer-Moore. Method of choice for exact string search, for a single pattern Typically, examines fewer than m characters of the text (sublinear time)

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Exact String Search

Exact String Search. Lecture 7: September 22, 2005 Algorithms in Biosequence Analysis Nathan Edwards - Fall, 2005. Boyer-Moore. Method of choice for exact string search, for a single pattern Typically, examines fewer than m characters of the text (sublinear time)

313 views • 30 slides

Boyer-Moore Algorithm

Boyer-Moore Algorithm. 3 main ideas right to left scan bad character rule good suffix rule. Right to left scan. 0 1 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 x z b c t z x t b p t x c t b p q. t b c b b. t b c b b. t b c b b. t b c b b. Bad character rule. Definition

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Boyer-Moore Algorithm

Boyer-Moore Algorithm. 3 main ideas right to left scan bad character rule good suffix rule. Right to left scan. 0 1 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5 6 7 x z b c t z x t b p t x c t b p q. t b c b b. t b c b b. t b c b b. t b c b b. Bad character rule. Definition

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HW 1 solution comments

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