'Approximate matching' presentation slideshows

Presentation by Itai Dinur

A Sublinear Algorithm For Weakly Approximating Edit Distance Batu, Ergun, Killian, Magen, Raskhodnikova, Rubinfeld, Sami. Presentation by Itai Dinur. Edit Distance (Levenshtein distance).

534 views • 38 slides

Next Generation Sequencing

Next Generation Sequencing. Sequencing techniques. ChIP-seq MBD-seq (MIRA-seq) BS-seq RNA-seq miRNA-seq. ChIP-seq. ChIP-Seq is a new frontier technology to analyze in vivo protein-DNA interactions. ChIP-Seq

374 views • 37 slides

Finding approximate occurrences of a pattern that contains gaps

Finding approximate occurrences of a pattern that contains gaps . Inbok Lee Costas S. Iliopoulos Alberto Apostolico Kunsoo Park. Contents. The exact/approximate gapped pattern matching problem Previous approaches Our contributions. Exact gapped pattern matching problem.

489 views • 33 slides

Efficient Semantic Deduction and Approximate Matching over Compact Parse Forests

Efficient Semantic Deduction and Approximate Matching over Compact Parse Forests. Roy Bar-Haim 1 , Jonathan Berant 2 , Ido Dagan 1 , Iddo Greental 2 , Shachar Mirkin 1 , Eyal Shnarch 1 , Idan Szpektor 1. 1 Bar-Ilan University 2 Tel-Aviv University. Our RTE-3 Recipe.

325 views • 32 slides

String Matching

String Matching. String matching: definition of the problem (text,pattern). depends on what we have: text or patterns. Exact matching:. The patterns ---> Data structures for the patterns. 1 pattern ---> The algorithm depends on |p| and | ?|.

534 views • 28 slides

Management of Uncertainty in Publish/Subscribe Systems

Management of Uncertainty in Publish/Subscribe Systems. Haifeng Liu. Department of Computer Sceince University of Toronto. AMGN=58. Publications. Publisher. Publisher. IBM=84. ORCL=12. JNJ=58. HON=24. INTC=19. MSFT=27. Subscriptions: IBM > 85 ORCL < 10 JNJ > 60. Notification.

293 views • 20 slides

Management of Uncertainty in Publish/Subscribe Systems

Management of Uncertainty in Publish/Subscribe Systems. Haifeng Liu. Department of Computer Sceince University of Toronto. AMGN=58. Publications. Publisher. Publisher. IBM=84. ORCL=12. JNJ=58. HON=24. INTC=19. MSFT=27. Subscriptions: IBM > 85 ORCL < 10 JNJ > 60. Notification.

270 views • 20 slides

Management of Uncertainty in Publish/Subscribe Systems

Management of Uncertainty in Publish/Subscribe Systems. Haifeng Liu. Department of Computer Sceince University of Toronto. AMGN=58. Publications. Publisher. Publisher. IBM=84. ORCL=12. JNJ=58. HON=24. INTC=19. MSFT=27. Subscriptions: IBM > 85 ORCL < 10 JNJ > 60. Notification.

303 views • 20 slides

A compression Algorithm for DNA sequences and its applications in Genome Comparison

A compression Algorithm for DNA sequences and its applications in Genome Comparison. X. Chen, S. Kwong, M. Li, Genome Informatics (GIW'99), Tokyo, Japan, pp.51-61, 1999. Compressibility of DNA Relatedness between 2 DNA sequences. Can we compress DNA sequences?.

320 views • 19 slides

A Cascaded Approach to Normalising Gene Mentions in Biomedical Literature

A Cascaded Approach to Normalising Gene Mentions in Biomedical Literature. Hui Yang, Goran Nenadic , John Keane School of Computer Science Manchester Interdisciplinary BioCentre G.Nenadic@manchester.ac.uk. Identification of gene names.

476 views • 18 slides

Introduction to Bioinformatics: Lecture IV Sequence Similarity and Dynamic Programming

364 views • 16 slides