'Accessible surface area' presentation slideshows

Secondary Structure & Solvent accessible surface Calculation

Secondary Structure & Solvent accessible surface Calculation. Lecture 6 Structural Bioinformatics Dr. Avraham Samson 81-871. DSSP. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features Wolfgang Kabsch, Christian Sander

514 views • 45 slides

A Molecular Replacement Pipeline Garib Murshudov Chemistry Department, University of York

?. A Molecular Replacement Pipeline Garib Murshudov Chemistry Department, University of York. Contents. Introduction Organisation of BALBES Search model preparation Updating BALBES Warnings: Twin Conclusions. Introduction.

511 views • 40 slides

Folding

Folding. Anfinsen cooperativity time scales, speed range Levinthal paradox ensembles energy landscape; funnel chaperones thermodynamics, 15 kcal/mol denaturation: thermal, chemical 2-state vs. intermediates, phi-values contact order as a metric of "foldedness"

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Pretreatment of different materials: An international perspective

455 views • 27 slides

AA & Genetic Code

AA & Genetic Code. DNA Bases. R. Y. W. M. K. B. A T G C. A T G C. A T G C. A T G C. s. N. H. V. D. A T G C. A T G C. A T G C. A T G C.

346 views • 22 slides

JKS SEMINAR Oznur Tastan November 21, 2005

JKS SEMINAR Oznur Tastan November 21, 2005. Property Based Conservation Percolation in Transmembrane Proteins. PERCOLATION. Percolation Threshold, p c. Percolation theory deals with the connectivity of components a system. p< p c there is no infinite cluster

464 views • 21 slides

Molecular Mechanics

Molecular Mechanics. force fields minimization. Force Fields. good review: MacKerell (2004) JCompChem, 25:1584 FF typically contains terms for: bonds and angles: harmonic/sigmoidal restraints non-bonded: electrostatics: Coulomb term VDW: 12-6 Lennard-Jones example - CHARMM FF:.

277 views • 16 slides