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7 th AQUAdeb meeting

7 th AQUAdeb meeting. Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam Bas@bio.vu.nl http://www.bio.vu.nl/thb /. Nantes, 2010/04/27. Updates DEBlab. DEB3: comments concept-summary notation errata micro-lectures exercises

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7 th AQUAdeb meeting

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  1. 7thAQUAdeb meeting Bas Kooijman Dept theoretical biology Vrije Universiteit Amsterdam Bas@bio.vu.nl http://www.bio.vu.nl/thb/ Nantes, 2010/04/27

  2. Updates DEBlab DEB3: comments concept-summary notation errata micro-lectures exercises DEBtool: see “what is new?” in the manual add_my_pet: 49 entries Life cycles (APG III, 2009) http://www.bio.vu.nl/thb/deb/deblab/

  3. Graduations 2010

  4. Network & Contacts = Japan (Yokohama) in DEB-tuna's; Marko Jusup visited A'dam 2010/02/07-13 = New Zealand (Liggins Inst, Auckland) in human obesity; Anne-Thea McGill will visit A'dam 2010/07/08-09 = Finland (Helsinki) in DEB-stochasticity; I visited Ido Filin 2010/03/22-25 = Australia (St Lucia) in bryozoan-physiology; Craig White (working with Mike Kearney, Melbourne) = Germany (Aachen) in starvation of Notonectus; Andreas Gergs will visit A’dam 2010/06/01-31 (working with Tjalling)

  5. Proposals = Jan Baas applied for Long Range Research Initiative (LRI) CEFIC - The European Chemical Industry Council: first selection OK = Tjalling Jager applied for NSF-Vidi at VUA: 2010/02; first selection OK = I applied for ERC-AdG (with Lisbon & Marseille): 2010/03 = 2011/01-ITN-call for DEB-training = future funding for AQUAdeb?

  6. PTRS 2010 • Tânia Sousa & Tiago Domingos & Jean-Christophe Poggiale & Bas Kooijman Formalised DEB theory restores coherence in core biology • Susana Vinga & Rute Neves & Helena Santos & Bernd Brandt & Bas Kooijman DEB applications at the molecular scale • Ingeborg van Leeuwen & Julio Vera González & Olaf Wolkenhauer Dynamic Energy Budget approaches for modelling organismal ageing • Laure Pecquerie & Roger Nisbet & Ronan Fablet & Anne Lorrain & Bas Kooijman The impact of metabolism on stable isotope dynamics • Michael Kearney & Steve Simpson & David Raubenheimer & Brian Helmuth Modelling the ecological niche from functional traits • Virginie Ducrot & Alexandre Péry & Laurent Lagadic Modelling long-term effects of diquat under realistic patterns of exposure in genetically differentiated populations of the freshwater gastropod Lymnaea stagnalis • Jean-Christophe Poggiale & Melika Baklouti & Bernard Queguiner & Bas Kooijman How far details are important in ecosystem modelling: the case of multi-limiting nutrients in phytoplankton - zooplankton interactions • Antonio Lorena & Gonçalo Marques & Bas Kooijman & Tânia Sousa Stylized facts in microalgal growth - interpretation in a DEB context • Odo Diekmann & Hans Metz How to lift a model for individual behaviour to the population level? • Tjalling Jager & Chris Klok Extrapolating toxic effects on individuals to the population level; the role of Dynamic Energy Budgets • Roger Nisbet & Ed McCauley Dynamic Energy Budget (DEB) theory and ecology: lessons from Daphnia • Henk van der Veer & Vânia Freitas & Joana Cardosa & Konstadia Lika & Joana Campos & Myron Peck & Bas Kooijman Temperature tolerance and energetics, a Dynamic Energy Budget-based comparison of North Atlantic marine species. • Tineke Troost & Jeroen Wijsman & Sofia Saraiva & Vânia Freitas Modeling shellfish growth with Dynamic Energy budget (DEB) models: an application for cockles and mussels in the Oosterschelde (SW Netherlands) • Bob Kooi & Jaap van der Meer Bifurcation theory, adaptive dynamics and DEB-structured populations of iteroparous species. http://www.bio.vu.nl/thb/deb/course/PTRS.html

  7. J. Sea Res. 2011 • Alunno-Bruscia, M., Veer, H. van der and Kooijman, S. A. L. M. • The AquaDEB project (phase II): what we’ve learned from applying the DEB theory on aquatic organisms • Jusup, M., Matsuda, H. and Kooijman, S. A. L. M. • Applicability of Dynamic Energy Budget approach to cultivation of bluefin tuna (Thunnus thynnus) • Kooijman, S. A. L. M • DEB-based body mass spectra for planktontic consumers • Mateus, M., Domingos, T. and Kooijman, S. A. L. M • Can we reach consensus between marine ecological models and metabolic theories in ecology? • A look at primary producers. • Lika, K. and Kooijman, S. A. L. M. • The topology of energy allocation • Lika, K., Freitas, V., Veer, H. van der and Kooijman, S. A. L. M. • Marine species diversity as reflected by DEB parameters. • Pecquerie, L., Augustine, S., Jusup, M. and Kooijman, S. A. L. M. • Understanding growth patterns of fish larvae in the context of the DEB theory. • Pecquerie, L., Kooijman, S. A. L. M. and Nisbet, R. M. • The variability of salmon life histories in a DEB context. • Saraiva, S., Sousa, T., Alunno-Bruscia, M., Pouvreau, S., Meer, J. van der and Kooijman, S. A. L. M. • From individuals to ecology in mussel energetics.

  8. Ecology 2012 ?

  9. Lisbon 2011/04/13-15 auditorium IST 2011/03/30-04/12 (wed-tue) DEB course, 2011/04/16 (sat) discussions We can recruit speakers from the PTRS/JRS-pool 23 "expressions of interest" at 2010/04/24, never has been that high = Steering committee: selection of keynote speakers + scientific and organising committees: Tiago Domingos, Tania Sousa, Bas Kooijman = Scientific committee (chaired by Tiago): selection of speakers on the basis of submitted abstracts: Tiago Domingos, Tania Sousa, Goncalo Marques, Bas Kooijman, Marianne Alunno-Bruscia, Jaap vd Meer, Henk vd Veer, Tjalling Jager, Jean-Christophe Poggiale, Roger Nisbet, Stephane Pouvreau = Organising committee (chaired by Tania): logistics Tiago Domingos, Tania Sousa, Goncalo Marques, Nuno Sarmento, Sonia Barbosa = Keynote speakers: Michel Loreau (opening) Mike Kearney, Jaap vd Meer, Marianne Alunno-Bruscia, Tom Anderson = Welcome: Tiago Domingos & Tania Sousa; Closure: Bas Kooijman

  10. Texel 2013/04/13-27 NIOZ Computational Science workshop at the Lorentz Center on DEB Leiden 2010/04/01-13 1-2 week meetings, 30-60 junior and senior researchers. Dr. Henriette Jensenius (jensenius@lorentzcenter.nl, 071-5275580) http://lorentzcenter.nl/infoorg.php 41 potential candidates (in computational sector): Ingeborg van Leeuwen S Dina Lika G Goncalo Marques P Irene Martins P Jaap vd Meer NL Hans Metz NL Erik Muller USA Roger Nisbet USA Erik Noonberg USA Laure Pecquerie USA Jean-Christophe Poggiale F Eric Rannou F Joao Rodrigues P Andre de Roos NL Pedro Santos P Sofia Saraiva P/NL Tania Sousa P Tineke Troost NL Susana Vinga P Jeroen Wijsman NL Elke Zimmer NL Morten Alver N Tom Anderson GB Pierre Auger F Starrlight Augustine F Cedric Bacher F Melika Baklouti F Hugo vd Berg GB Martin Boer NL Sandrine Charles F Odo Diekmann NL Tiago Domingos P Yoan Eynaud F Ulrike Feudel D Ido Filin Fin Matz Gyllenberg Fin Tjalling Jager NL Marco Jusup Jap Tin Klancjek Kro Bob Kooi NL Bas Kooijman NL

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