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Metabolic Reconstruction of Laccaria Bicolor. Dag Ahrén Microbial Ecology Lund University, Sweden. Metabolic reconstruction. Pathway Tools Reconstruct metabolic map/ genome database Pathway hole filler Format suitable for browsing (Web) and computation (Lisp/Perl/Java).

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metabolic reconstruction of laccaria bicolor

Metabolic Reconstruction of Laccaria Bicolor

Dag Ahrén

Microbial Ecology

Lund University, Sweden

metabolic reconstruction
Metabolic reconstruction
  • Pathway Tools
  • Reconstruct metabolic map/ genome database
  • Pathway hole filler
  • Format suitable for browsing (Web) and computation (Lisp/Perl/Java)
reconstruction of metabolic pathways

Pathway/Genome

Database

Laccaria bicolor genome data

Scaffolds

Pathways

Gene models

PathoLogic Software

Integrates genome and pathway data to identify putative metabolic networks

Reactions

Intron position

Compounds

Pathways

Pathologic file creator

Gene Products

Metacyc

Reactions

Uniprot annotation

Genes

Compounds

Genomic Map

Reconstruction of Metabolic Pathways
slide4

Metabolic reconstruction of L. bicolor

9315 genes with Uniprot BLASTP match below e-10

Pathways 83

Enzymatic reactions 438

Enzymes 187

Compounds 392

slide8

Metabolic reconstruction of L. bicolor

  • May be useful for identifying possible missing genes in the gene models. Prediction tool.
  • Draft map provides useful information for joint annotation of metabolic enzymes between groups in the consortium.
  • Web page to start the investigations.
  • Web resource for the Laccaria community