Hpc at hcc jun wang
Download
1 / 14

HPC at HCC Jun Wang - PowerPoint PPT Presentation


  • 76 Views
  • Uploaded on

HPC at HCC Jun Wang. hcc.unl.edu. Outline of Workshop2. Familiar with Linux file system Familiar with Shell environment Familiar with module command Familiar with queuing system How to submit a serial job How to submit a MPI parallel job. HPC at HCC Jun Wang. hcc.unl.edu.

loader
I am the owner, or an agent authorized to act on behalf of the owner, of the copyrighted work described.
capcha
Download Presentation

PowerPoint Slideshow about 'HPC at HCC Jun Wang' - netis


An Image/Link below is provided (as is) to download presentation

Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author.While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server.


- - - - - - - - - - - - - - - - - - - - - - - - - - E N D - - - - - - - - - - - - - - - - - - - - - - - - - -
Presentation Transcript
Hpc at hcc jun wang
HPC at HCCJun Wang

hcc.unl.edu

Outline of Workshop2

Familiar with Linux file system

Familiar with Shell environment

Familiar with module command

Familiar with queuing system

How to submit a serial job

How to submit a MPI parallel job


Hpc at hcc jun wang1
HPC at HCCJun Wang

hcc.unl.edu

Familiar with Linux file system

Basic File System Structure

Basic File System Partitions

On tusker and sandhills:

$HOME (/home) is read-only on computing nodes, 10 GB space/group, daily backup

$WORK (/work) is writable on all nodes, 50 TB space/group, no backup


Hpc at hcc jun wang2
HPC at HCCJun Wang

hcc.unl.edu

Familiar with BASH Shell environment


Hpc at hcc jun wang3
HPC at HCCJun Wang

hcc.unl.edu

Familiar with module command


Hpc at hcc jun wang4
HPC at HCCJun Wang

hcc.unl.edu

Familiar with module command


Hpc at hcc jun wang5
HPC at HCCJun Wang

hcc.unl.edu

Familiar with queuing system-PBS


Hpc at hcc jun wang6
HPC at HCCJun Wang

hcc.unl.edu

Familiar with queuing system-SLURM


Hpc at hcc jun wang7
HPC at HCCJun Wang

hcc.unl.edu

How to submit a serial job


Hpc at hcc jun wang8
HPC at HCCJun Wang

hcc.unl.edu

How to submit a serial job


Hpc at hcc jun wang9
HPC at HCCJun Wang

hcc.unl.edu

How to submit a MPI parallel job


Hpc at hcc jun wang10
HPC at HCCJun Wang

hcc.unl.edu

How to submit a MPI parallel job


Hpc at hcc jun wang11
HPC at HCCJun Wang

hcc.unl.edu

More useful SLURM commands

“sinfo” : Check available partitions and their status


Hpc at hcc jun wang12
HPC at HCCJun Wang

hcc.unl.edu

More useful SLURM commands

“scontrol show job YourJobID”: Check details of a specific job


Hpc at hcc jun wang13
HPC at HCCJun Wang

hcc.unl.edu

Thank You!

To be continued:

How to run Gaussian09

How to compile and run GAMESS

How to compile and run GROMACS