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Finland. 301. 310. 314. Sweden. 298. 322. 307. 305. Baltic Sea. Estonia. 327. Russia. Latvia. Figure SM1: Map of part of the Baltic Sea with the sample stations in the Gulf of Finland marked. A. B. C. D. Figure SM2 :

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slide1

Finland

301

310

314

Sweden

298

322

307

305

Baltic Sea

Estonia

327

Russia

Latvia

Figure SM1:

Map of part of the Baltic Sea with the sample stations in the Gulf of Finland marked.

slide2

A

B

C

D

Figure SM2:

Depth profiles for A) salinity, B) temperature, C) density and D) oxygen saturation

slide3

CCY0422

CCY0450

CCY0431

CCY0419

CCY0461

CCY0456

CCY0435

CCY0457

CCY0443

CCY0434

CCY0423

CCY0455

82/100

CCY0416

CCY0417

CCY0492

CCY0441

CCY0424

88/100

CCY0451

BSea A

99/100

CCY0418

CCY0464

CCY0469

CCY0439

CCY0462

CCY0421

--/78

CCY0446

CCY0467

CCY0452

100/100

87/100

CCY0444

CCY0437

CCY0448

CCY0449

CCY0489

CCY0491

CCY0458

CCY0463

CCY0466

CCY0415

97/100

BSea B

CCY0436

CCY0465

AANO01000009 Synechococcus WH 5701

AF317073 Synechococcus BO8805

0.01

Figure SM3:

Neighbour-joining phylogeny of group BSea isolates

slide4

99

Pelagic LS

99

BS group 3

97

DQ526396 Synechococcus LS0534

99

DQ526397 Synechococcus LS0535

CCY0444

65

CCY0469

89

CCY0443

S320-12-7

AAN01000009 Synechococcus WH5701

52

WH5701 Cluster/

BSea group

(PC) strains

CCY0416

CCY0441

98

CCY0415

92

CCY0490

65

EF513487 Synechococcus BO8805

86

Group I (2)

99

DQ519960 clone LScpcBA25

99

PD cpcBA 1

Group A (1)

97

PD cpcBA 2

RS9917

99

99

CCY9201 cluster

AF223436 Synechococcus PS724

PD cpcBA 3

99

Group C

Group D

57

76

PS729 cluster

73

BSea group (32)

99

99

Group E (4)

Group B

99

74

99

Group H

M95288 Synechococcus WH8020 rpcBA

CP000097 Synechococcus CC9902

88

X59809 Synechococcus WH7803

Marine

Synechococcus

AACY01236433 SAR- partial sequence

98

77

CP000110 Synechococcus CC9605

M95289 Synechococcus sp.

93

BX569694 Synechococcus WH8102 rpcBA

99

AAOK00000000 Synechococcus WH7805

Outgroups

0.05

Figure SM4:

Neighbour-joining phylogeny of picocyanobacterial cpcBA operon

slide5

CP000239 1 Synechococcus JA-3-3B 1

CP000240 1 Synechococcus JA-2-3B 1

CP000240 2 Synechococcus JA-2-3B 2

CP000239 2 Synechococcus JA 3-3B 2

K02659 Synechococcus PCC7002

AF223458 Synechococcus PCC6717

AF223457 Synechococcus PCC6716

D13173 Synechococcus elongatus

AF223464 Synechococcus PCC7943

M94218 Synechococcus PCC6301

M95288 Synechococcus WH8020 rpcBA

DQ519992 clone LScpcBA62

AB008546 Synechococcus PCC7942

DQ520008 clone LScpcBA88

DQ525058 clone LScpcBAMay83

DQ520009 clone LScpcBA89

DQ520002 clone LScpcBA79

DQ519980 clone LScpcBA49

DQ519991 clone LScpcBA61

DQ519993 clone LScpcBA63

DQ519978 clone LScpcBA47

DQ525039 clone LScpcBAMay29

DQ519997 clone LScpcBA71

DQ520004 clone LScpcBA82

DQ519957 clone LScpcBA22

DQ519965 clone LScpcBA30

DQ519982 clone LScpcBA52

DQ519953 clone LScpcBA18

DQ519977 clone LScpcBA45

DQ519970 clone LScpcBA36

DQ519990 clone LScpcBA60

BX569694 Synechococcus WH8102 rpcBA

DQ519998 clone LScpcBA72

DQ525038 clone LScpcBAMay26

AAOK00000000 Synechococcus WH7805 unF

CP000097 Synechococcus CC9902

DQ519943 clone LScpcBA1

DQ520005 clone LScpcBA85

DQ519984 clone LScpcBA54

DQ519950 clone LScpcBA15

DQ520007 clone LScpcBA87

X59809 Synechococcus

CP000110 synechococcus CC9605

AACY01236433 SAR- partial sequence

DQ525054 clone LScpcBAMay73

DQ520003 clone LScpcBA80

DQ519988 clone LScpcBA58

DQ519975 clone LScpcBA42

DQ525050 clone LScpcBAMay64

DQ520006 clone LScpcBA86

M95289 Synechococcus WH8020

DQ519985 clone LScpcBA55

DQ520011 clone LScpcBA93

DQ525048 clone LScpcBAMay61

0.05

AY151228 Synechococcus MW6C6

DQ519987 clone LScpcBA57

DQ519949 clone LScpcBA13

S298-3-11

AY151229 Synechococcus MW6B6

DQ519996 clone LScpcBA70

S300-12-2

AY151230 Synechococcus MW32B5

DQ525052 clone LScpcBAMay68

DQ519955 clone LScpcBA20

S298-3-6

DQ525033 clone LScpcBAMay20

AY151226 Synechococcus MW25B5

S298-3-3

AY151227 Synechococcus MW33B4

DQ519945 clone LScpcBA4

DQ525044 clone LScpcBAMay46

DQ525040 clone LScpcBAMay34

AY151231 Synechococcus MW28B3

DQ519994 clone LScpcBA64

DQ520001 clone LScpcBA77

DQ519962 clone LScpcBA27

DQ519888 clone PDcpcBA12

DQ519964 clone LScpcBA29

S298-3-1

DQ519900 clone PDcpcBA27

DQ519961 clone LScpcBA26

S298-3-5

DQ519899 clone PDcpcBA26

DQ519963 clone LScpcBA28

DQ519941 clone PDcpcBA92

DQ519946 clone LScpcBA6

DQ519948 clone LScpcBA12

DQ519925 clone PDcpcBA68

DQ519895 clone PDcpcBA21

DQ520000 clone LScpcBA74

DQ525045 clone LScpcBAMay49

DQ519911 clone PDcpcBA48

DQ525056 clone LScpcBAMay78

DQ519909 clone PDcpcBA44

DQ519954 clone LScpcBA19

DQ525041 clone LScpcBAMay40

DQ519920 clone PDcpcBA61

DQ519916 clone PDcpcBA55

DQ519951 clone LScpcBA16

DQ525042 clone LScpcBAMay41

DQ519937 clone PDcpcBA85

DQ519926 clone PDcpcBA70

DQ519968 clone LScpcBA34

DQ525030 clone LScpcBAMay13

DQ519903 clone PDcpcBA32

AY151225 Synechococcus MW26A5

DQ525037 clone LScpcBAMay25

DQ519908 clone PDcpcBA42

DQ519902 clone PDcpcBA31

DQ519959 clone LScpcBA24

DQ519979 clone LScpcBA48

DQ519944 clone LScpcBA2

DQ519986 clone LScpcBA56

DQ525031 clone LScpcBAMay16

AY151215 Synechococcus MW15*2

DQ519971 clone LScpcBA37

AY224203 Synechococcus BO 8809

DQ519956 clone LScpcBA21

AY224202 Synechococcus BO 8807

DQ519947 clone LScpcBA11

AY224204 Synechococcus BO 9202

DQ525053 clone LScpcBAMay72

DQ519974 clone LScpcBA40

AF223448 Synechococcus PS714

DQ519972 clone LScpcBA38

AF223437 Synechococcus PS728

DQ525032 clone LScpcBAMay17

AY151213 Synechococcus MW4C3

DQ519989 clone LScpcBA59

AY151212 Synechococcus MW10*1

DQ525046 clone LScpcBAMay56

AY151211 Synechococcus MW86A1

DQ525051 clone LScpcBAMay65

AY151217 Synechococcus MW77D1

DQ519958 clone LScpcBA23

AY151220 Synechococcus MW74D3

DQ525059 clone LScpcBAMay85

AY151219 Synechococcus MW73D5

DQ525043 clone LScpcBAMay42

AY151218 Synechococcus MW74D6

DQ519995 clone LScpcBA66

DQ520012 clone LScpcBA95

DQ519999 clone LScpcBA73

S320-3-6

DQ519952 clone LScpcBA17

S314-12-10

DQ525047 clone LScpcBAMay58

S320-3-4

DQ520010 clone LScpcBA92

S320-12-8

DQ525049 clone LScpcBAMay63

S320-12-6

AF223435 Synechococcus PS722

DQ525026 clone LScpcBAMay1

AF223445 Synechococcus PS719

DQ519967 clone LScpcBA33

DQ519976 clone LScpcBA43

AF223432 Synechococcus PS723

AF223442 Synechococcus PS726

DQ519966 clone LScpcBA31

AF223449 Synechococcus PS716

DQ519973 clone LScpcBA39

DQ519981 clone LScpcBA51

EF513489 Synechococcus CCY9202

DQ525034 clone LScpcBAMay21

CCY0454

DQ519983 clone LScpcBA53

CCY0470

DQ519969 clone LScpcBA35

CCY0450

DQ525028 clone LScpcBAMay6

CCY0420

DQ520013 clone LScpcBA96

CCY0467

DQ525036 clone LScpcBAMay24

CCY0437

DQ525029 clone LScpcBAMay9

CCY0458

DQ525057 clone lScpcBAMay79

CCY0431

DQ525027 clone LScpcBAMay5

CCY0451

DQ525055 clone LScpcBAMay75

S298-3-8

CCY0464

S298-3-9

CCY0418

S298-3-2

CCY0461

S300-12-6

CCY0434

S300-12-8

CCY0419

CCY0449

CCY0444

CCY0469

CCY0457

CCY0443

CCY0424

S320-12-7

DQ526396 Synechococcus LS0534

CCY0421

CCY0441

CCY0465

DQ526397 Synechococcus LS0535

CCY0415

CCY0436

AAN01000009 Synechococcus WH5701 unF

CCY0490

CCY0416

CCY0422

CCY0439

CCY0435

S314-12-9

EF513487 Synechococcus BO8805

CCY0466

S300-3-9

CCY0491

S314-12-6

S314-12-5

CCY0446

CCY0489

S300-12-1

S314-3-8

CCY0417

CCY0448

CCY0463

AY151224 Synechococcus MW100C3

S300-12-4

CCY0452

CCY0455

AY151223 Synechococcus MW97C4

S314-3-1

AY151222 Synechococcus MW99B6

CCY0492

S314-12-4

DQ519886 clone PDcpcBA10

S320-12-2

CCY0423

S300-3-5

S314-3-11

CCY0462

DQ526401 Synechococcus LS0530

S300-12-3

S300-3-2

CCY0456

S320-3-5

S320-3-9

AF223447 Synechococcus PS727

S300-12-7

AF223451 Synechococcus PS729

S300-3-6

S320-3-3

S320-3-2

DQ519917 clone PDcpcBA56

S320-12-3

S314-3-5

DQ519887 clone PDcpcBA11

S320-12-9

DQ519891 clone PDcpcBA15

S314-12-8

DQ519942 clone PDcpcBA93

S314-12-11

CCY0468

CCY0432

DQ519914 clone PDcpcBA51

S300-12-5

DQ519898 clone PDcpcBA25

S300-3-8

S300-12-10

DQ519890 clone PDcpcBA14

DQ519892 clone PDcpcBA16

S300-3-3

S320-12-1

DQ519884 clone PDcpcBA7

S320-3-1

DQ519904 clone PDcpcBA36

S314-12-1

DQ519883 clone PDcpcBA5

AF223438 Synechococcus PS674

S314-12-7

AF223443 Synechococcus PS681

S298-3-7

S298-3-4

S320-12-5

S320-3-10

S314-3-9

S314-3-3

CCY0426

S314-3-10

AF223434 Synechococcus PS673

S300-12-9

DQ519910 clone PDcpcBA46

S314-3-4

S320-12-10

S300-3-1

AF223439 Synechococcus PS676

S314-12-3

AF223433 Synechococcus PS672

DQ525035 clone LScpcBAMay23

DQ519905 clone PDcpcBA37

DQ519940 clone PDcpcBA91

DQ519919 clone PDcpcBA59

S300-3-10

S300-3-7

AF223441 Synechococcus PS678

S300-3-4

DQ519880 clone PDcpcBA1

S320-3-11

S320-3-7

S314-3-6

DQ519927 clone PDcpcBA71

EF513488 Synechococcus CCY9201

DQ526399 Synechococcus LS0503

DQ519896 clone PDcpcBA22

DQ526398 Synechococcus LS0417

DQ519918 clone PDcpcBA58

DQ526403 Synechococcus LS0590

DQ519913 clone PDcpcBA50

DQ519897 clone PDcpcBA24

DQ519885 clone PDcpcBA9

AF223460 Synechococcus PCC7009

DQ519938 clone PDcpcBA89

DQ519912 clone PDcpcBA49

DQ519882 clone PDcpcBA4

AY224201 Synechococcus BO 8801

DQ519893 clone PDcpcBA18

DQ519933 clone PDcpcBA80

DQ519921 clone PDcpcBA62

AF223436 Synechococcus PS724

DQ526402 Synechococcus LS0588

AANP01000000 Synechococcus RS99171 unF

DQ519906 clone PDcpcBA38

DQ519889 clone PDcpcBA13

DQ526400 Synechococcus LS0425

AANP01000000 Synechococcus RS99172 unF

AF223462 Synechococcus PCC7918

DQ519929 clone PDcpcBA74

AF223428 Synechococcus PS680

AF223463 Synechococcus PCC7920

AF223459 Synechococcus PCC6904

DQ519960 clone LScpcBA25

out-group

Marine

H

LS-clones

B

E

BSea

WH5701

I

D

A

Figure SM5:

Neighbour-joining phylogeny of picocyanobacterial cpcBA operon

slide6

Marine Synechococcus

Group E

Outgroups

Group A

BSea group

PE

Lake Superior Group

Group I

Bsea group

PC

Figure SM6:

Neighbor-net network based on the 342 cpcBA operon sequences.