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Zope/Plone/Python for Research Ben Best

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OBIS • SEAMAP mapping marine megavertebrates http://seamap.env.duke.edu. Zope/Plone/Python for Research Ben Best. Outline. Project Context Initiative for CMS Site Tour Technical Plone Transition from PHP Database Connectivity Portlet Creation Future. OBIS-SEAMAP – Online Archive.

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Presentation Transcript
slide1
OBIS•SEAMAP

mapping marine megavertebrates

http://seamap.env.duke.edu

Zope/Plone/Python

for Research

Ben Best

outline
Outline
  • Project Context
  • Initiative for CMS
  • Site Tour
  • Technical Plone
    • Transition from PHP
    • Database Connectivity
    • Portlet Creation
  • Future
obis seamap online archive
OBIS-SEAMAP – Online Archive

Search

  • Query taxonomic, spatial and temporal data

Explore

  • Browse datasets and species profiles

Map

  • Interactively map biological and environmental data
software architecture
Software Architecture
  • Map Framework
  • Chameleon
  • IMF

PHP

Web User

  • Mapper
  • MapServer
  • ArcIMS
  • Web Content
  • Plone
  • www.cmsmatrix.com

Python

  • GeoDatabase
  • PostGIS
  • ArcSDE
  • Database
  • PostgreSQL
  • Oracle / SQLServer
industrial services
“Industrial” Services

Data Factoryfor Providers

Data Minefor Users

Upload

Search

Map

Browse

GeoDatabase

EditMetadata

ViewDetail,Map

ManageDatasets

Download

Data Pipelinesfor Servers

Z39.50

XML

OPeNDAP

FGDC

WMS

coml obis context
CoML / OBIS Context

Historical-MAP

Field Projects

Taxonomic

OBIS-SEAMAP

Ocean Biogeographic Information System

Future-MAP

Regional /

Physiographic

Regional OBIS Nodes

Ocean Biogeographic Information System

Spatial Ecological Analysis of Megavertebrate Populations

marine mammals, seabirds, sea turtles

web

trophic networks
TrophicNetworks

“trophic” information networks

fisheries / mgmt

top predators

prey

OBIS-SEAMAP

producers

oceanography

Hierarchical Information networks….

Portals

Nodes

spatial networks
SpatialNetworks

Digital Atlas of Marine Mammals

Regional OBIS Nodes

Fornwall, M. Oceanography • Vol. 13 • No. 3/2000

context gbif
Context + GBIF
  • GBIF Portal Toolkit
  • Overview
  • Download

Global Biodiversity Information Facility

Ocean Biogeographic Information System

OBIS•SEAMAP

web transition
Web Transition

New (Zope/Plone)http://seamap.env.duke.edu

Original (PHP)

http://obis.env.duke.edu

(CMS for GBIF and Duke)

transitioning from php
Transitioning from PHP
  • External Method ie geturl
  • PHParser ie dataset_detail
  • DTML ie index
  • ZPT ie datasets search

# geturl.pyimport urllib,sys,os

def geturl(url):

fp=urllib.urlopen(url)

content=fp.read()

fp.close()

return content

database connectivity
Database Connectivity
  • Database Connection
  • Z SQL Query
  • DTML / ZPT Code
portlet creation
Portlet Creation
  • portlet_datahighlights
python in arcgis 9
Python in ArcGIS 9
  • ModelBuilder
  • Python Scripting
  • ArcGIS Server
slide16
Home

Datasets

  • Tabs
    • Datasets
    • Species
    • Mapping
    • Bibliography
  • Navigation
  • Highlights
  • Login
  • Search
  • News
  • Events

go

datasets
Datasets

Catalogue view

go

datasets detail
Datasets > Detail
  • Summary

records, map

temporal and

spatial extents

  • Links toMapping,Species, Metadata
  • Citation, Abstract, Purpose, Contacts

Search

go

data provider interface
Data Provider Interface

Data Provider Login View

Profile

Datasets

Usage Statistics