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AtIAA1. AtIAA2. SlIAA2. AtIAA33. AtIAA3. SlIAA33. SlIAA3. SlIAA35. SlIAA22. 86. AtIAA29. AtIAA4. 22. SlIAA29. 12. 48. SlIAA4. 18. 78. SlIAA36. SlIAA1. 74. 60. SlIAA23. AtIAA34. 90. 12. SlIAA21. 71. AtIAA32. 97. 56. 91. SlIAA8. SlIAA32. 99. AtIAA8. AtIAA30. 19.

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Presentation Transcript
slide1

AtIAA1

AtIAA2

SlIAA2

AtIAA33

AtIAA3

SlIAA33

SlIAA3

SlIAA35

SlIAA22

86

AtIAA29

AtIAA4

22

SlIAA29

12

48

SlIAA4

18

78

SlIAA36

SlIAA1

74

60

SlIAA23

AtIAA34

90

12

SlIAA21

71

AtIAA32

97

56

91

SlIAA8

SlIAA32

99

AtIAA8

AtIAA30

19

58

100

28

AtIAA9

AtIAA20

66

83

100

SlIAA9

57

AtIAA31

29

54

SlIAA27

SlIAA12

64

38

AtIAA27

14

AtIAA12

33

14

21

86

AtIAA17

28

26

AtIAA13

94

23

29

37

SlIAA17

SlIAA13

59

28

22

SlIAA7

SlIAA11

80

AtIAA7

32

AtIAA11

48

97

AtIAA14

40

AtIAA10

56

SlIAA14

94

AtIAA28

44

80

SlIAA16

75

SlIAA26

AtIAA16

AtIAA26

AtIAA5

AtIAA18

SlIAA19

AtIAA15

AtIAA19

AtIAA6

SlIAA15

FigS1

K

A

J

I

H

B

G

C

F

D

E

slide2

Supplemental Figure S1.Evolutionary relationships of Arabidopsis and tomato Aux/IAA proteins.

The evolutionary history was inferred using the Neighbor-Joining method (Saitou and Nei, 1987). The optimal tree with the sum of branch length = 7.80811039 is shown. The evolutionary distances were computed using the Poisson correction method (Zuckerkandl and Pauling, 1965) and are in the units of the number of amino acid substitutions per site. The analysis involved 54 amino acid sequences. All positions containing gaps and missing data were eliminated. There were a total of 68 positions in the final dataset. Evolutionary analyses were conducted in MEGA5 (Tamura et al., 2011).

slide3

2

8

12

IAA8

(1.65)

(9.96)

(57.41)

(59.71)

(64.34)

(62.66)

(64.37)

(62.66)

(65.67)

(62.73)

(63.15)

IAA23

(51.42)

IAA9

(59.33)

IAA11

IAA16

(79.87)

FigS2

1

3

4

5

6

7

9

10

11

IAA22

IAA21

(0.21)

IAA32

(2.49)

IAA35

(2.74)

(3.07)

(2.49)

IAA17

IAA29

IAA33

(11.42)

IAA7

(33.17)

IAA4

(33.19)

(37.76)

IAA36

IAA12

(45.61)

IAA2

IAA19

IAA3

IAA1

IAA15

IAA14

(63.95)

IAA26

IAA13

IAA27

Supplemental Figure S2. Genomic distribution of Aux/IAA genes on tomato chromosomes.

The arrows next to gene names show the direction of transcription. The number in parentheses designates the position of the ATG of each Aux/IAA gene in megabases (Mb) on tomato chromosome pseudomolecules (Tomato Whole Genome Scaffolds data V2.4). The chromosome numbers are indicated at the top of each bar.

slide4

A

LxLxLx motif

DLxLxLx motif

B

LxLxLxLxL motif

FigS3

slide5

Supplemental Figure S3. Amino acid sequences for IAA proteinsthat contain an atypical domain I

(A) Amino acid sequences for IAA proteins that contain an expanded repression domain I. Amino acid sequence comparison of tomato Sl-IAA11, Sl-IAA12 and Sl-IAA13 with those from Arabidopsis AtIAA10 (AT1G04100), AtIAA11 (AT4G28640), AtIAA12 (AT1G04550) and AtIAA13 (AT1G04550). The conserved LxLxLxLxLx motif is underlined. The sequences were aligned with Clustal X method and adjusted manually.

(B)Amino acid sequences between conserved domains I and II for IAA proteins that contain a second LxLxL motif. Amino acid sequence comparison of tomato Sl-IAA7, Sl-IAA14, Sl-IAA16 and Sl-IAA17 with those from Arabidopsis AtIAA7 (AT3G23050), AtIAA14 (AT4G14550), AtIAA16 (AT3G04730) and AtIAA17 (AT1G04250). The conserved LxLxLx motif (Domain I) and the DLxLxL motif are underlined. The sequences were aligned with Clustal X method and adjusted manually.