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BIRN Data Repository. Christine Fennema-Notestine, PhD Director Jeffrey S. Grethe, Ph.D. Sustainable archive of data freely available for sharing and exchange. Works with investigators to enable sharing of their existing data, supporting NIH guidelines.

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BIRN Data Repository

Christine Fennema-Notestine, PhD

Director

Jeffrey S. Grethe, Ph.D.

birn data repository overview
Sustainable archive of data freely available for sharing and exchange.

Works with investigators to enable sharing of their existing data, supporting NIH guidelines.

Provides means to capture, curate, store, query, view, and download biomedical data.

Data to include biomedical human and animal model data such as imaging, clinical, microarray,

and associated data.

BIRN Data Repository - Overview
birn data repository framework
BIRN Data Repository Framework

Data Upload

Organize

Describe

Data

Processing

Data

Acquisition

Database Management

Data

Grid

Remote

Databases

Local

Databases

Builds on BIRN infrastructure to provide a federated data repository

Ontology

Integrate

Share

Query

Interface

Discover

Analyze

Visualize

sharing your data
BDR will enable sharing of your existing data through a rich curatorial environment, built on the BIRN portal foundation.

BDR will provide guidance and suggested language for institutional IRB approval to share your data with the public.

In October of 2007, data submission capabilities will be operational to begin expanding the BDR.

Data upload will be accomplished through BIRN test bed tools in collaboration with BIRN.

Sharing your data
databasing tools
Databasing tools

Federated Informatics Research Environment (FIRE)

MOUSE BIRN ATLASING TOOLKIT (MBAT)

eXtensible Neuroimaging Archive Toolkit (XNAT)

data access and download
Data discoverable via a concept-based query interface; a common ontology [BIRNLex] is required to enable intelligent exploration.

Data freely available with an active e-mail address and acceptance of data use agreement:

Users will make no attempt to identify the individuals whose data are included in the BDR.

Any presentations and/or publications utilizing data shared through the BDR must acknowledge data sources.

Data Access and Download
samples of currently available data
Human structural MRI, clinical, and demographic data: 416 subjects across the adult life span, including individuals with dementia of the Alzheimer's type. [OASIS]Samples of currently available data
  • Human functional & structural MRI, behavioral, clinical, and demographic data: 100 scanning sessions on five individuals across sites. [FBIRN Phase I]
samples of currently available data1
Mouse atlases: 3D Atlas based on a magnetic resonance microscopy (MRM) image from a normal, 100-day old male C57BL/6J mouse; diffusion-weighted image, label, and mask volumes. [Mouse BIRN].

Mouse microarray studies: Processed microarray data from multiple experiments and sources; several strains, developmental stages, and non-neural data. [Mouse BIRN Atlasing Toolkit]

Samples of currently available data
birn data repository
In the future, the BDR will make collaborative workspaces available, prior to sharing data, for the analysis and visualization of data.

For more information related to

available data resources,

use of data, and

the process for data sharing and submission

visit http://nbirn.net/bdr/index.shtm, or contact

Director, Christine Fennema-Notestine, PhD

Submissions Coordinator, Andrea Arnaud

BDR_info@nbirn.net

BIRN Data Repository