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TEXT MINING TO SUPPORT THE S&T DEVELOPMENT CYCLE

TEXT MINING TO SUPPORT THE S&T DEVELOPMENT CYCLE DR. RONALD N. KOSTOFF OFFICE OF NAVAL RESEARCH kostofr@onr.navy.mil 703-696-4198 PRESENTED TO ICDR INTERAGENCY COMMITTEE ON DISABILITY RESEARCH 10 AUGUST 2006 OUTLINE PERSONAL BACKGROUND PURPOSE OF PRESENTATION

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TEXT MINING TO SUPPORT THE S&T DEVELOPMENT CYCLE

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  1. TEXT MINING TO SUPPORT THE S&T DEVELOPMENT CYCLE • DR. RONALD N. KOSTOFF • OFFICE OF NAVAL RESEARCH • kostofr@onr.navy.mil • 703-696-4198 • PRESENTED TO ICDR • INTERAGENCY COMMITTEE ON DISABILITY RESEARCH • 10 AUGUST 2006

  2. OUTLINE • PERSONAL BACKGROUND • PURPOSE OF PRESENTATION • IMPORTANCE TO PLANNING/ MANAGEMENT/ EVALUATION • S&T DEVELOPMENT CYCLE • MANAGEMENT DECISION AIDS • TEXT MINING • TEXT MINING FOR S&T DEVELOPMENT CYCLE • TEXT MINING PILOT PROGRAM THRUSTS • TEXT MINING EXAMPLES • TEXT MINING EXAMPLES – BACKUP • REFERENCES

  3. PERSONAL BACKGROUND • PH.D. IN AEROSPACE SCIENCES • NINE YEARS AT BELL LABS • TECHNICAL RESEARCH • ECONOMIC AND FINANCIAL STUDIES • EIGHT YEARS AT U.S. DEPARTMENT OF ENERGY • PROGRAM MANAGEMENT • FUSION/ NUCLEAR/ ALL ENERGY • TECHNOLOGY ASSESSMENT • BES REVIEW • OHER REVIEW • 23 YEARS OFFICE OF NAVAL RESEARCH • DIRECTOR, TECHNICAL ASSESSMENT – TEN YEARS • MANAGED ILIR PROGRAM – FIVE YEARS • TEXT MINING PILOT PROGRAM – SEVEN YEARS

  4. PURPOSE OF PRESENTATION • SHOW HOW TEXT MINING CAN INCREASE AWARENESS OF TECHNOLOGIES FOR DISABILITY RESEARCH IN OPEN GLOBAL LITERATURE • SHOW HOW TEXT MINING CAN SUPPORT ALL PHASES OF S&T DEVELOPMENT CYCLE

  5. IMPORTANCE TO PLANNING/ MANAGEMENT/ EVALUATION • PLANNING/ EVALUATION/ MANAGEMENT REQUIRES AWARENESS OF ALL NATIONAL AND GLOBAL S&T • S&T COMPLETED • S&T ONGOING • S&T PLANNED • S&T POTENTIAL • TEXT MINING PROVIDES THIS AWARENESS OF DOCUMENTED S&T AT DIFFERENT TEMPORAL STAGES • TEXT MINING IS CRITICAL PATH FOR OPTIMAL PERFORMANCE OF ANY FEDERAL AGENCY’S MANAGEMENT’S MISSION • EXPLOITATION • COORDINATION • AVOID REDUNDANCY

  6. S&T DEVELOPMENT CYCLE • PLANNING • IDENTIFICATION • SELECTION • EXECUTION • TRANSITION

  7. MANAGEMENT DECISION AIDS(S&T DEVELOPMENT CYCLE) • EACH PHASE REQUIRES MANAGEMENT DECISION • MANAGEMENT DECISION AIDS (MDAs) HAVE BEEN DEVELOPED TO SUPPORT DECISIONS • PEER REVIEW • METRICS • ROADMAPS • TEXT MINING • ALL MDAs ARE INTER-RELATED • E.G., CREDIBLE PEER REVIEW REQUIRES METRICS, ROADMAPS, TEXT MINING

  8. TEXT MINING • DEFINITION • EXTRACTION OF USEFUL INFORMATION FROM TEXT • IN MODERN USE, INVOLVES AUTOMATED OR SEMI-AUTOMATED COMPUTERIZED EXTRACTION OF INFORMATION FROM LARGE VOLUMES OF ELECTRONICALLY STORED MATERIAL

  9. TEXT MINING (CONT’D) • STEPS IN TEXT MINING STUDY (RETRIEVAL/ PROCESSING/ ANALYSIS) • DEVELOP QUERY FOR INFORMATION RETRIEVAL • RETRIEVE RECORDS FROM SOURCE DATABASE • PROCESS RETRIEVED RECORDS • BIBLIOMETRICS • COMPUTATIONAL LINGUISTICS • PERFORM ANALYSIS/ DRAW CONCLUSIONS

  10. TEXT MINING (CONT’D)(ANALYSIS TOOLS) • EVALUATIVE BIBLIOMETRICS • USES COUNTS OF PUBLICATIONS/ PATENTS/ CITATIONS TO DEVELOP S&T PERFORMANCE INDICATORS • APPLICATIONS • IDENTIFY INFRASTRUCTURE (KEY AUTHORS, CENTERS OF EXCELLENCE) OF TECHNICAL DOMAIN • IDENTIFY EXPERTS FOR WORKSHOPS AND PANELS • DEVELOP SITE VISITATION STRATEGIES TO ASSESS ORGANIZATIONS GLOBALLY • IDENTIFY IMPACTS OF RESEARCH (CITATIONS)

  11. TEXT MINING (CONT’D)(ANALYSIS TOOLS) • COMPUTATIONAL LINGUISTICS • IDENTIFIES TECHNICAL THEMES IN LARGE DATABASES FROM PATTERNS IN TEXT • APPLICATIONS • ENHANCED INFORMATION RETRIEVAL • INCREASED AWARENESS OF GLOBAL TECHNICAL LITERATURE STRUCTURE • RADICAL DISCOVERY FROM DISPARATE LITERATURES • UNCOVERING UNEXPECTED ASYMMETRIES FROM TECHNICAL LITERATURE • ESTIMATING GLOBAL LEVELS OF EFFORT IN S&T SUB-DISCIPLINES • TRACKING MYRIAD RESEARCH IMPACTS ACROSS TIME AND APPLICATIONS AREAS

  12. TEXT MINING FOR S&T DEVELOPMENT CYCLES&T DEVELOPMENT CYCLE

  13. TEXT MINING PILOT PROGRAM THRUSTS • FOUR MAJOR THRUST AREAS • LITERATURE-RELATED DISCOVERY • (TWO EXAMPLES PRESENTED) • COUNTRY ASSESSMENTS • SINGLE TECHNOLOGY CORE LITERATURE ASSESSMENTS • (SPINAL CORD INJURY EXAMPLE PRESENTED) • SINGLE TECHNOLOGY CORE AND EXPANDED LITERATURE ASSESSMENTS

  14. TEXT MINING EXAMPLES • LITERATURE-BASED DISCOVERY • LITERATURE-ASSISTED DISCOVERY • QUERY DEVELOPMENT • SPINAL CORD INJURY – EXAMPLE • PROLIFIC AUTHORS • AUTHOR FACTOR MATRIX • MOST CITED FIRST AUTHORS • AUTHORS OF MOST CITED SPINAL CORD INJURY PAPERS • PROLIFIC JOURNALS • MOST CITED JOURNALS • JOURNALS OF MOST CITED SPINAL CORD INJURY PAPERS • PROLIFIC INSTITUTIONS • INSTITUTIONS OF MOST CITED SPINAL CORD INJURY PAPERS • INST AUTO-CORREL MAP • INST-PHRASE CROSS-CORREL MAP • PROLIFIC COUNTRIES • COUNTRIES OF MOST CITED SPINAL CORD INJURY PAPERS • COUNTRY AUTO-CORREL MAP • COUNTRY PHRASE CROSS-CORREL MAP • MOST CITED DOCUMENTS • MOST CITED SPINAL CORD INJURY PAPERS • PROLIFIC PHRASES • PHRASE AUTO-CORREL MAP • PHRASE FACTOR MATRIX

  15. TEXT MINING EXAMPLESDISCOVERY - BACKGROUND • DISCOVERY AND INNOVATION CRITICAL FOR MODERN ECONOMIES AND MILITARIES • RADICAL DISCOVERY REQUIRES INSIGHTS FROM DISPARATE DISCIPLINES • INCREASED SPECIALIZATION REDUCES AWARENESS OF OTHER DISCIPLINES • REQUIRE METHOD FOR SYSTEMATIC ACCESS TO OTHER DISCIPLINES

  16. RADICAL DISCOVERY AND INNOVATION(INSIGHTS FROM DISPARATE LITERATURES) BACK-END (DISCOVERY) FRONT-END (CHARACTERIZATION) • STEP 3 (DISCOVERY) • IDENTIFY POTENTIAL DISCOVERY • DRAW LINK BETWEEN POTENTIAL DISCOVERY AND CORE LITERATURE • STEP 1 (CHARACTERIZE • CORE LITERATURE) • QUERY • CHARACTERIZATION • INFRASTRUCTURE • TECH STRUCTURE MASS SEPARATION WATER PURIFICATION • STEP 2 (CHARACTERIZE • EXPANDED • LITERATURE) • EXPANDED QUERY • CHARACTERIZATION • INFRASTRUCTURE • TECH STRUCTURE DISINFECTION

  17. QUERY EXAMPLES-DESALINATION CORE-EXPANDED LITERATURE FINAL CORE LITERATURE QUERY INITIAL CORE LITERATURE QUERY DESALINAT* OR DESALT* OR EVAPORAT* BRINE* OR EVAPORATION POND* OR DEMINERALIZED WATER OR SOLAR POND* OR SOLAR STILL* OR DESALINIZATION OR WATER PURIFICATION … NSF DESALINAT* OR DESALT* OR DESALINIZATION FINAL EXPANDED LITERATURE QUERY MASS SEPARATION OR FILTRATION OR ULTRAFILTRATION OR NANOFILTRATION OR NANOFILTER* OR MICROFILTER* OR MICROFILTRATION OR DIAFILTRATION OR DISTILLATION OR DISTILLATE OR ELECTRODIALYSIS OR ELECTRODIALYTIC OR ELECTROOSMOSIS OR ELECTROOSMOTIC OR ELECTROPHORESIS OR EXTRACTION EFFICIENCY OR EXTRACTION SOLVENT OR EXTRACTION YIELD OR EXTRACTION YIELDS OR MICROEXTRACTION OR SOLVENT EXTRACTION OR PHASE EXTRACTION OR DNA EXTRACTION …

  18. TEXT MINING EXAMPLES DISCOVERY - APPLICATIONS • LITERATURE-BASED DISCOVERY • ANALYST PERFORMS FRONT-END/ BACK-END • NOTIFICATIONS (BAA, SBIR, ETC) • BAA NOTIFICATION SENT TO EXPERTS IDENTIFIED IN FRONT-END • WORKSHOPS • EXPERTS IDENTIFIED IN FRONT-END INVITED TO WORKSHOPS • ROADMAPS • EXPERTS IDENTIFIED IN FRONT-END FORM ROADMAP DEVELOPMENT TEAMS

  19. TEXT MINING EXAMPLES DISCOVERY - APPLICATIONS (CONT’D) • NOTIFICATIONS (JOURNALS) • SPECIAL ISSUE NOTIFICATION SENT TO EXPERTS IDENTIFIED IN FRONT END • ADVISORY PANELS • EXPERTS IDENTIFIED IN FRONT END INVITED TO PARTICIPATE IN ADVISORY PANELS • REVIEW PANELS • EXPERTS IDENTIFIED IN FRONT END INVITED TO PARTICIPATE IN REVIEW PANELS • POINTS OF CONTACT • EXPERTS IDENTIFIED IN FRONT END SERVE AS POINTS OF CONTACT • ORGANIZATION AND TEAM STRUCTURING • EXPERTS AND DISCIPLINES IDENTIFIED IN FRONT END USED TO STRUCTURE TEAMS AND ORGANIZATIONS

  20. TEXT MINING EXAMPLESDISCOVERY - NSF DATABASE STUDY • OBJECTIVES • IDENTIFY NSF PROJECTS RELATED DIRECTLY AND INDIRECTLY TO WATER PURIFICATION • COORDINATION/ JOINT PLANNING/ JOINT FUNDING • PRODUCTS DESCRIBED • BAA NOTIFICATION (SPINOFF)

  21. TEXT MINING EXAMPLESDISCOVERY - NSF DATABASE STUDY (CONT’D) • BAA NOTIFICATION • GENERATED EXPANDED LIST OF BAA NOTIFICATION RECIPIENTS • OBTAINED 300 WHITE PAPERS • (THREE TIMES LAST YEARS INPUT) • APPROX. 2/3 FROM DISPARATE LITERATURES • TEN TIMES INCREASE SHOULD BE POSSIBLE • STARTED LATE IN BAA CYCLE • INTERMEDIATE QUERY USED • 2.5 WEEKS BEFORE DEADLINE • BAA CONTENT NOT INTEGRATED WITH NOTIFICATION

  22. TEXT MINING EXAMPLESLITERATURE-BASED DISCOVERY • OBJECTIVE • DISCOVERY BASED ON LITERATURE ALONE • MOST COMPREHENSIVE AND OBJECTIVE APPROACH • PROOF-OF-PRINCIPLE • COMPLETING BENCHMARK MEDICAL STUDY • SHOWING AT LEAST ORDER OF MAGNITUDE MORE DISCOVERY THAN ALL PRIOR EFFORTS ON THIS BENCHMARK PROBLEM COMBINED! • INITIATING DESALINATION EFFORT

  23. TEXT MINING EXAMPLESQUERY DEVELOPMENT-NANOTECHNOLOGY • (2003 STUDY - ~90 TERMS) • NANOPARTICLE* OR NANOTUB* OR NANOSTRUCTURE* OR NANOCOMPOSITE* OR NANOWIRE* OR NANOCRYSTAL* OR NANOFIBER* OR NANOFIBRE* OR NANOSPHERE* OR NANOROD* OR NANOTECHNOLOG* OR NANOCLUSTER* OR NANOCAPSULE* OR NANOMATERIAL* OR NANOFABRICAT* OR NANOPOR* OR NANOPARTICULATE* OR NANOPHASE OR NANOPOWDER* OR NANOLITHOGRAPHY OR NANO-PARTICLE* OR NANODEVICE* OR NANODOT* OR NANOINDENT* OR NANOLAYER* OR NANOSCIENCE OR NANOSIZE* OR NANOSCALE* OR ((NM OR NANOMETER* OR NANOMETRE*) AND (SURFACE* OR FILM* OR GRAIN* OR POWDER* OR SILICON OR DEPOSITION OR LAYER* OR DEVICE* OR CLUSTER* OR CRYSTAL* OR MATERIAL* OR ATOMIC FORCE MICROSCOP* OR TRANSMISSION ELECTRON MICROSCOP* OR SCANNING TUNNELING MICROSCOP*)) OR QUANTUM DOT* OR QUANTUM WIRE* OR ((SELF-ASSEMBL* OR SELF-ORGANIZ*) AND (MONOLAYER* OR FILM* OR NANO* OR QUANTUM* OR LAYER* OR MULTILAYER* OR ARRAY*)) OR NANOELECTROSPRAY* OR COULOMB BLOCKADE* OR MOLECULAR WIRE* • (UPDATED 2005 STUDY >300 TERMS)

  24. SPINAL CORD INJURY EXAMPLEGROUNDRULES • OBJECTIVE: IDENTIFY STRUCTURE AND INFRASTRUCTURE OF GLOBAL SPINAL CORD INJURY RESEARCH LITERATURE • DATABASE: SCIENCE CITATION INDEX/ SOCIAL SCIENCE CITATION INDEX • TIMEFRAME: 2005-2006 • QUERY: SPINAL CORD AND INJUR* • DOCUMENT TYPES: RESEARCH AND REVIEW ARTICLES • RETRIEVAL: 2481 RECORDS

  25. SPINAL CORD INJURY EXAMPLE PROLIFIC AUTHORS

  26. SPINAL CORD INJURY EXAMPLEAUTHOR FACTOR MATRIX – TOP 50 AUTHORS

  27. SPINAL CORD INJURY EXAMPLEMOST CITED FIRST AUTHORS

  28. SPINAL CORD INJURY EXAMPLEAUTHORS OF MOST CITED SPINAL CORD INJURY PAPERS

  29. SPINAL CORD INJURY EXAMPLEPROLIFIC JOURNALS

  30. SPINAL CORD INJURY EXAMPLEMOST CITED JOURNALS – (14 OVERLAP W/ MOST PROLIFIC)

  31. SPINAL CORD INJURY EXAMPLEJOURNALS OF MOST CITED SPINAL CORD INJURY PAPERS

  32. SPINAL CORD INJURY EXAMPLEPROLIFIC INSTITUTIONS

  33. SPINAL CORD INJURY EXAMPLEINSTITUTIONS OF MOST CITED SPINAL CORD INJURY PAPERS

  34. SPINAL CORD INJURY EXAMPLEINSTITUTION AUTO-CORRELATION MAP

  35. SPINAL CORD INJURY EXAMPLEINSTITUTION-PHRASE CROSS-CORRELATION MAP

  36. SPINAL CORD INJURY EXAMPLEPROLIFIC COUNTRIES

  37. SPINAL CORD INJURY EXAMPLECOUNTRIES OF MOST CITED SPINAL CORD INJURY PAPERS

  38. SPINAL CORD INJURY EXAMPLECOUNTRY AUTO-CORRELATION MAP

  39. SPINAL CORD INJURY EXAMPLECOUNTRY-PHRASE CROSS-CORRELATION MAP

  40. SPINAL CORD INJURY EXAMPLEMOST CITED DOCUMENTS (FROM RETRIEVED DOCS ONLY)

  41. SPINAL CORD INJURY EXAMPLEMOST CITED SPINAL CORD INJURY PAPERS (SCI) • CHOI DW. EXCITOTOXIC CELL-DEATH. JOURNAL OF NEUROBIOLOGY 23 (9): 1261-1276 NOV 1992. TIMES CITED: 1207 • CODERRE TJ, KATZ J, VACCARINO AL, ET AL. CONTRIBUTION OF CENTRAL NEUROPLASTICITY TO PATHOLOGICAL PAIN - REVIEW OF CLINICAL AND EXPERIMENTAL-EVIDENCE. PAIN 52 (3): 259-285. 1993. TIMES CITED: 1001 • BRACKEN MB, SHEPARD MJ, COLLINS WF, ET AL. A RANDOMIZED, CONTROLLED TRIAL OF METHYLPREDNISOLONE OR NALOXONE IN THE TREATMENT OF ACUTE SPINAL-CORD INJURY - RESULTS OF THE 2ND NATIONAL ACUTE SPINAL-CORD INJURY STUDY. NEW ENGLAND JOURNAL OF MEDICINE 322 (20): 1405-1411 MAY 17 1990. TIMES CITED: 917 • WOOLF CJ, THOMPSON SWN. THE INDUCTION AND MAINTENANCE OF CENTRAL SENSITIZATION IS DEPENDENT ON N-METHYL-D-ASPARTIC ACID RECEPTOR ACTIVATION - IMPLICATIONS FOR THE TREATMENT OF POSTINJURY PAIN HYPERSENSITIVITY STATES. PAIN 44 (3): 293-299 MAR 1991. TIMES CITED: 881 • TOMINAGA M, CATERINA MJ, MALMBERG AB, ET AL. THE CLONED CAPSAICIN RECEPTOR INTEGRATES MULTIPLE PAIN-PRODUCING STIMULI. NEURON 21 (3): 531-543 SEP 1998. TIMES CITED: 732

  42. SPINAL CORD INJURY EXAMPLEMOST CITED SPINAL CORD INJURY PAPERS • JOHANSSON CB, MOMMA S, CLARKE DL, ET AL. IDENTIFICATION OF A NEURAL STEM CELL IN THE ADULT MAMMALIAN CENTRAL NERVOUS SYSTEM. CELL 96 (1): 25-34 JAN 8 1999. TIMES CITED: 702 • PETRALIA RS, YOKOTANI N, WENTHOLD RJ. LIGHT AND ELECTRON-MICROSCOPE DISTRIBUTION OF THE NMDA RECEPTOR SUBUNIT NMDAR1 IN THE RAT NERVOUS-SYSTEM USING A SELECTIVE ANTIPEPTIDE ANTIBODY. JOURNAL OF NEUROSCIENCE 14 (2): 667-696. 1994. TIMES CITED: 667 • DUBNER R, RUDA MA. ACTIVITY-DEPENDENT NEURONAL PLASTICITY FOLLOWING TISSUE-INJURY AND INFLAMMATION. TRENDS IN NEUROSCIENCES 15 (3): 96-103 MAR 1992. TIMES CITED: 618 • CHEN L, HUANG LYM. PROTEIN-KINASE-C REDUCES MG2+ BLOCK OF NMDA-RECEPTOR CHANNELS AS A MECHANISM OF MODULATION. NATURE 356 (6369): 521-523 APR 9 1992. TIMES CITED: 612 • WEITZ JI. LOW-MOLECULAR-WEIGHT HEPARINS. NEW ENGLAND JOURNAL OF MEDICINE 337 (10): 688-698 SEP 4 1997. TIMES CITED: 592

  43. SPINAL CORD INJURY EXAMPLEPROLIFIC PHRASES (FROM ABSTRACTS)

  44. SPINAL CORD INJURY EXAMPLEPHRASE AUTO-CORRELATION MAP

  45. SPINAL CORD INJURY EXAMPLEPHRASE FACTOR MATRIX (429 PHRASES)

  46. TEXT MINING EXAMPLES BACKUP • JOURNAL COMPARISONS (NEUROPSYCHOLOGY) • UNEXPECTED ASYMMETRIES (BILATERAL CANCER) • RESEARCH IMPACT-CITATION MINING • MOST CITED DOCUMENTS • REFERENCES

  47. TEXT MINING EXAMPLESJOURNAL COMPARISONS - CITATIONS

  48. TEXT MINING EXAMPLESJOURNAL COMPARISONS - CITATIONS • A number of interesting observations may be made from Table 7. First, the most cited articles in Neuropsychologia are cited, on average, more than three times as often as the most cited articles in Cortex, and the most cited articles in Brain are cited, on average, more than twice as often as the most cited articles in Neuropsychologia. • Second, the most cited papers have more authors than the least cited, in all three journals, and the effect is most pronounced in Neuropsychologia. Additionally, the average number of authors increases with the average number of citations, ranging from about four authors of the most cited Cortex papers to about seven authors of the most cited Brain papers. • Third, the most cited papers have substantially more references than the least cited, in both journals, and the effect is most pronounced in Neuropsychologia. Additionally, the average number of citations increases with the average number of references (an effect observed by the first author in recent unpublished text mining studies), ranging from about 46 references in the most cited Cortex papers to about 68 references in the most cited Brain papers. • Fourth, there is no clear overall trend in citations as a function of institutional representation. The institution/ (institution + university) ratio (where institution in the table cells should be interpreted as any non-university organization; e.g., research laboratory, clinic, hospital, company) for most cited papers starts at 0.5 for Cortex, drops to 0.2 for Neuropsychologia, and increases sharply to 0.8 for Brain. This ratio for least cited papers starts at 0.4 for both Cortex and Neuropsychologia, and decreases to 0.2 for Brain. Its most dramatic change is from 0.8 for the most cited Brain papers to 0.2 for the least cited Brain papers. • Fifth, the most cited papers in Cortex are all from continental Western Europe, with heavy representation from Italy and France, while the least cited papers in Cortex represent four different continents. The most cited papers in Neuropsychologia are, with the exception of Italy, from the UK and North America (with heavy representation from the UK and USA), while the least cited papers have more representation from Western Europe but none from the UK. The most cited papers in Brain are from the major English-speaking countries, whereas the least cited are scattered around Western Europe, Asia, and North America. • Sixth, there is a distinct shift in type of study (the bottom of Table 7) in proceeding from Cortex to Neuropsychologia to Brain. Clinical behavioral studies, many of them essentially case studies, predominate the most cited Cortex papers. There are only two papers characterized as Diagnostic-Non-Invasive (e.g., PET, MRI, etc). Neuropsychologia has more of a balance between Behavioral and Diagnostic-Non-Invasive in its ten most cited papers. Brain shows a heavy emphasis on Diagnostic-Non-Invasive (7/10), two papers on surgical procedures, and one on Diagnostic-Invasive. Based on reading Abstracts from each of these journals, the types as represented in the top ten most cited articles roughly approximate the types of papers published overall. Thus, as citations increase in absolute amounts, the study type transitions from the clinically oriented behavioral focus to the correlates with more objective measurements. Also, as the results from the most cited papers section showed, as the study type transitions from the clinically oriented behavioral focus (‘soft’ technology) to the more objective measurements (‘hard’ technology), the most cited papers tend to become more recent.

  49. TEXT MINING EXAMPLESBILATERAL ASYMMETRY PREDICTION

  50. TEXT MINING EXAMPLESBILATERAL ASYMMETRY PREDICTION-WRITEUP • APPROACH • Four types of cancers were examined: lung, kidney, teste, ovary. For each cancer, Medline case report articles focused solely on 1) cancer of the right organ and 2) cancer of the left organ were retrieved, using information retrieval techniques (5) developed by the author. For example, to obtain the Medline records focused on cancer of the left kidney, the following query was used: (LEFT KIDNEY OR LEFT RENAL) AND KIDNEY NEOPLASMS AND CASE REPORT[MH] NOT (RIGHT KIDNEY OR RIGHT RENAL). The ratio of numbers of right organ to left organ articles was compared to actual patient incidence data obtained from the NCI’s SEER database for the period 1979-1998. • RESULTS • The results are presented in the table. The first column contains the organ in which the lateral asymmetry is studied, the second column contains the ratio of Medline case report records focused solely on right organ cancer to those focused solely on left organ cancer, and the third column contains a similar ratio obtained from the NCI SEER database of patient incidence records. • The agreement between the Medline record ratios and the NCI’s patient incidence data ratios ranged from within three percent for lung cancer to within one percent for teste and ovary cancer.

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