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BeeSpace and Beyond Functional Analysis of Genes and Environment Bruce Schatz Department of Medical Information Science schatz@uiuc.edu , www.canis.uiuc.edu Institute for Genomic Biology (IGB) www.beespace.uiuc.edu Illinois Informatics Institute (I3) www.informatics.uiuc.edu

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beespace and beyond functional analysis of genes and environment
BeeSpace and Beyond Functional Analysis of Genes and Environment

Bruce Schatz

Department of Medical Information Science

schatz@uiuc.edu, www.canis.uiuc.edu

Institute for Genomic Biology (IGB)

www.beespace.uiuc.edu

Illinois Informatics Institute (I3)

www.informatics.uiuc.edu

Dell Computer Visit July 7, 2008

beespace fibr project
BeeSpace FIBR Project

BeeSpace project is NSF FIBR flagship

Frontiers Integrative Biological Research,

$5M for 5 years at University of Illinois

Analyzing Nature and Nurture in Societal Roles using honey bee as model

Genomic technologies in wet lab and dry lab

Bee [Biology] gene expressions

Space [Informatics] concept navigations

Net Futures: Google Tech Talk on Telesophy

beespace faculty
BeeSpace Faculty

Investigators

  • Bruce Schatz Medical Information Science
  • ChengXiang Zhai Computer Science (north)
  • Sandra Rodriguez-Zas Animal Sciences (south)

Supports (Students and Offices)

  • Saurabh Sinha Computer Science
  • Sheng Zhong Bioengineering
  • Matthew Hudson Crop Sciences

Collaborators

  • Jiawei Han Computer Science
  • John MacMullen Library Information Science
  • Roxana Girju Linguistics
bioinformatics classrooms
Bioinformatics Classrooms

Bioinformatics Courses:

Chemical Engineering 571 Bioinformatics Algorithms

joint with Computer Science

Animal Sciences 542 Applied Bioinformatics

joint with Crop Sciences

Example IGB Informatics Student:

Brant Chee working on semantic clustering of

Biological abstracts and Healthcare messages using small worlds algorithms from statistical physics

beyond beespace into the biospace
Beyond BeeSpace into the BioSpace

The Analysis Environment technology is GENERAL! BirdSpace? BeeSpace?

PigSpace? CowSpace?

ArthropodSpace? AnimalSpace?

fage group
FAGE Group

Functional Analysis of Genes and Environment

BioSpace across entire biomedical literature

Medline + Genbank -- Expressions + Populations

Genotype + Phenotype for Behaviors + Diseases

Computer Science, Bioengineering

Animal Sciences, Crop Sciences

Chemical Engineering, Statistics

bioinformatics flagships
Bioinformatics Flagships

NSF FIBR $5M 2004-2009

Frontiers Integrative Biological Research

USDA SCRI $4M 2008-2011

Specialty Crops Research Initiative

NIH CEGS $10M 2009-2013

Center Excellence Genomic Science

illinois informatics institute i3
Illinois Informatics Institute (I3)

New Institute at University of Illinois

Virtual only for Interdisciplinary Education

New PhD Degree in Informatics start 2009

Signature is Applications plus Foundations

Initial Core Areas are: Bioinformatics, Health Informatics, Spatial Informatics, Cultural Informatics, Societal Informatics, Data Analytics, Information Visualization

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