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Welcome!!

Welcome!!. Workshop Goals. Make you useful to SCIRun/BioPSE and map3d Make SCIRun/BioPSE and map3d useful to you! Send you home with a useful tool. Direction Chris Johnson Rob MacLeod Dave Weinstein Support Staff Allyne Betancourt Heidi Gellerson Richard Coffey Nathan Galli

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Welcome!!

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  1. Welcome!!

  2. Workshop Goals • Make you useful to SCIRun/BioPSE and map3d • Make SCIRun/BioPSE and map3d useful to you! • Send you home with a useful tool

  3. Direction Chris Johnson Rob MacLeod Dave Weinstein Support Staff Allyne Betancourt Heidi Gellerson Richard Coffey Nathan Galli Erik Jorgenson Instructors Darby Uitert Gordon Kindlmann Dav de St. Germain Marty Cole Steve Parker Developers Michael Callahan McKay Davis Bryan Worthen Ted Dustman Systems Support Robert Cummins Simon Gao The Cast (in order of appearance)

  4. Day #1 The Basics • Schedule • 10:00 Welcome/Overview and Logistics (SCR) • 10:10 Introduction to the Center • 10:20 Background for SCIRun/BioPSE(SCR) • 10:35 Example Problem (SCR) • 11:00 Coffee Break • 11:15 map3d Intro (SCR) • 11:45 Elements of BioPSE/SCIRun • 12:15 Teem, DTI, and BioTensor • 1:00 ITK • 1:15 Lunch (SCR) • 2:00 Lab Session (VSC) • 3:30 Research Presentations • 5:00 Free Evening (optional group dinner)

  5. Day #2 Advanced SCIRun • Schedule • 8:30 Pickup at University Guest House • 9:00 Installation and Configuration (Dav) • 9:30 Source code organization (Dave) • 10:00 SCIRun dataflow datatypes, I/O (Dave) • 10:20 Dynamic Compilation (Marty) • 10:45 Coffee Break • 11:00 Network Editing, Subnets (Dave) • 11:20 Debugging in SCIRun (Dav) • 11:40 Future of SCIRun (Steve and Dave) • 11:10 map3d Options and Usage, Scripting (Rob) • 12:20 Lunch • 1:20 Lab Time • 5:00 Return to Guest House • 6:00 Leave Guest House for Dinner (Millcreek Inn) Lab Time

  6. Day #3 Making Modules • Schedule • 8:30 Pickup at University Guest House • 9:00 Module Design and Creation (Marty) • 10:00 Programming Conventions (Dav) • 10:15 GUI Design Guidelines (Dav) • 10:30 Coffee Break • 10:45 Data Import/Export (Dave) • 11:15 Contributing Code (Dave) • 11:30 Lab Time • 12:30 Lunch • 1:30 Lab Session (cont’d) (VSC) • 4:00 Discussion and Evaluation (Rob/Dave) • 5:00 Return to Guest House Lab Time

  7. Guest Machines • Linux: • norbert.sci.utah.edu (RH9)grumpy.sci.utah.edu (RH8 derivative)shot.sci.utah.edu (Mandrake 9.x)dopey.sci.utah.edu (Mandrake 9.x)dione.sci.utah.edu (RH8 derivative) • MacOSX:samurai-jack.sci.utah.edu (10.3.x)mojojojo.sci.utah.edu (10.2.x) • Irix:rapture.sci.utah.edu (5 heads)ray.sci.utah.edu (1 head at the demo desk)

  8. Guest Accounts • Account names: • ncrr0..ncrr3: Linux • ncrr4…ncrr9: SGIs • ncrr8, ncrr9: Mac/OSX • Password: • ncrrC0NF zero

  9. Logistics (Allyne) • Transportation • Maps; SCI Institute Area • Welcome Packet • Meals; Beverages (e.g., with dinner) • Questions?

  10. Website • Schedule • Slides from talks • Links to resources • Anything else we think of www.sci.utah.edu/ncrr/workshops/workshop03/

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