Encoding Information for DNA computing. Shinnosuke Seki. Purpose. What’s an advantage of encoding? To make a “ good ” or tractable code set for DNA computing. Development of polynomial-time algorithms which decide whether a given code set is “good” or “bad”. Claude Elwood Shannon.
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Information flow R
1 -> 2
2 -> 3
3 -> 4
Refer to [AlSa97], [TKY04] (,  in this table)
AGTAGGCTAAAGCCCA formal language approach (cont.)
Input: A nondeterministic automaton M,
Output: Y/N depending on whether L(M) is hp(θ, k)-free.
Input: A deterministic automaton M1, and NFA M2.
Output: Y/N depending on whether there is a word
s.t. is hp(θ, k)-free.