Practical applications of HMMs : ChromHMM. Sushmita Roy Nov 5th. Chromatin organization and gene expression. http:// www.youtube.com/watch?v =eYrQ0EhVCYA. ChIP-seq to measure histone data. Adapted from Dewey lecture and Peter Park Nature Genetics Review.
Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author.While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server.
Adapted from Dewey lecture and Peter Park Nature Genetics Review
Chromatin state: A specific combinations of mark values.
Important because it can be used to segment the genome into biologically
Emission parameters for state 5
Input chromatin marks
Inferred state sequences
Max posterior state
Posterior probability values of each state