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Biological Data. Computer Calculations. +. Bioinformatics. Bioinformatics Topics for 2006. Overview of Full Range of Topics in Bioinformatics Details on "Classic" (core) Bioinformatics Comparing Sequences Dynamic Programming, Substitution Matrices, Scoring Systems and P-values

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Presentation Transcript
Bioinformatics

Biological

Data

Computer

Calculations

+

Bioinformatics


Bioinformatics topics for 2006
Bioinformatics Topics for 2006

  • Overview of Full Range of Topics in Bioinformatics

  • Details on "Classic" (core) Bioinformatics

    • Comparing Sequences

      • Dynamic Programming, Substitution Matrices, Scoring Systems and P-values

      • Rapid similarity search via Hashing (BLAST)

      • Multiple Alignments and Patterns (HMMs)

    • Sequence-structure relationships

      • Statistical Propensities & Sec. Struc. Predictions

    • Comparing Structures

      • LSQ fit and Structure Alignment


Bioinformatics topics for 20061
Bioinformatics Topics for 2006

  • Additional Focus Topics (all if time)

    • Expression Data Analysis

    • Molecular Simulation

    • Gene Finding and Intergenic Analysis

  • Related Course CS/CBB 545b

    • Data mining with Applications in Life Sciences

    • Tu and Th 2:30-3:45 in Spring

    • Focus on Mining Techniques

    • Applications to Protein Networks

  • GersteinLab.org/courses/452

    • Past Years Handouts