1 / 6

Taverna in App4Andy: NGS Annotation Pipeline Update & Expansion

Explore the latest updates and upcoming steps in the AWS-based NGS annotation pipeline for Boran, N’Dama, Cape Buffalo species. This project includes Watson data processing, TSB grant utilization starting in May, and tool identification for pre-App4Andy SNP annotation. Replicate Galaxy's functionality in bioinformatics with a strategic promotion of Taverna for high-throughput analysis. Foster collaborations aligning with funding council agendas and engage with major data centers for outreach. Dependencies include Taverna Server, Client Libraries Alignment, and cloud execution through NeISS/Methodbox. Stay tuned for an enhanced Taverna service in the cloud led by Andrea's PhD work.

justin
Download Presentation

Taverna in App4Andy: NGS Annotation Pipeline Update & Expansion

An Image/Link below is provided (as is) to download presentation Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author. Content is provided to you AS IS for your information and personal use only. Download presentation by click this link. While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server. During download, if you can't get a presentation, the file might be deleted by the publisher.

E N D

Presentation Transcript

  1. Taverna in App4Andy

  2. Current status • Version 1.0 • AWS-based NGS annotation pipeline • Completed Boran, N’Dama, Cape Buffalo • Processed Watson data through Andrea’s pipeline • Not done through cloud (yet) • Updating image resources with current data and code

  3. Next steps • TSB grant • Begins in May • To address NHS requirements and security (by Eagle Genomics) • Pre-analysis tool identification • pre-App4Andy SNP annotation….i.e…Sequence alignment • Replicate the functionality of Galaxy

  4. Funding • Bioinformatics • TSB • Ph.D (Andrea) • Infrastructure • Top sliced

  5. Alignment • Strategic • Promotion of Taverna in high throughput analysis • Outreach to major data centres • Collaborations that follow Strategic tracks on funding Council agendas • Dependencies • Taverna Server • Taverna Server Client Libraries

  6. Alignment • Dependents • Next Gen. (TSB) • NeISS/Methodbox (Cloud execution of workflows) • Taverna as a service (in the Cloud) • Andrea

More Related