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Preliminary CpG Plot Analysis of Masked vs. Unmasked Gene Predictions in Maize Gene GRMZM2G304575

Explore the CpG plot analysis differences between masked and unmasked sequences of maize gene GRMZM2G304575 using GeneMark and FGENESH for gene prediction. Compare repeat sequences and gene models to uncover variations.

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Preliminary CpG Plot Analysis of Masked vs. Unmasked Gene Predictions in Maize Gene GRMZM2G304575

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  1. Seq3 AnnotationGroup 3 Anne Brown Josh Fitzgerald Jieqing Ping

  2. Preliminary Search

  3. CpG Plot

  4. Repeat Sequence analysis

  5. Comparing Masked to Unmasked in FGENESH

  6. Comparing Masked to Unmasked in GeneMark

  7. Gene Prediction

  8. Go Terms

  9. Gene Models Gene10-6 Locus names: GRMZM2G304575 Map Position: [139,939,739 - 139,940,191]; (79.6 centisomes) on Chr.8 Length: 453 bp / 150 aa PFAM ID: PF00125: Core histone H2A/H2B/H3/H4 , PF00808: Histone-like transcription factor (CBF/NF-Y) and archaealhistone Top 4 Models Predicted by I-TASSER

  10. GRMZM2G470292

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