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Comparative Analysis of Protein Families in Bacterial Strains

Explore genome variations and SNP occurrences in bacterial strains using HMM logos for visualization.

jinelle-taylor
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Comparative Analysis of Protein Families in Bacterial Strains

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  1. Maela spr0336 ritR nuc: 690 sites, 108 variable sites (colored by serotype) aa: 230 sites, 27 variable sites (colored by serotype) 3.24 SNPs 0.24 “SNP”s

  2. PMEN1 spr0336 ritR nuc: 690 sites, 4 variable sites aa: 230 sites, 1 variable site Pos30: D -> N GAT -> AAT Pos30: D -> E GAT -> GAG 0.001 SNPs

  3. combined spr0336 ritR nuc: 690 sites, 109 variable sites aa: 230 sites, 27 variable sites 0.2 “SNP”s 2.18 SNPs

  4. combined spr0336 ritR nuc (dataset) aa (dataset) Maela PMEN1

  5. Maela spr1107 walR Nuc: 705 sites, 24 variable sites aa: 235 sites, 6 variable sites 0.04 SNPs 0.005 “SNP”s

  6. PMEN1 spr1107 walR This tree really cheered up the whole office! nuc: 705 sites, 2 variable sites aa: 235 sites, 0 variable sites

  7. combined spr1107 walR nuc: 705 sites, 25 variable sites aa: 235 sites, 6 variable sites 0.05 SNPs

  8. combined spr1107 walR nuc (dataset) aa (dataset) Maela PMEN1

  9. Schuster-Boeckler B, Schultz J, Rahmann S: HMM Logos for visualization of protein families. BMC Bioinformatics 2004, 5:7 spr0336 RitR Maela PMEN1 all spr1107 WalR Maela PMEN1 all

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