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Giri Palanisamy NBII , ORNL Mike Frame NBII, USGS. US GBIF Tools and Services. August 12 th , 2010. NBII-GBIF Services. Hosts GBIF mirror for North America Various data extraction services and visualizations IPT prototype installation Trainings/Workshops on DiGIR and IPT

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us gbif tools and services
Giri Palanisamy

NBII, ORNL

Mike Frame

NBII, USGS

US GBIF Tools and Services

August 12th , 2010

nbii gbif services
NBII-GBIF Services
  • Hosts GBIF mirror for North America
  • Various data extraction services and visualizations
  • IPT prototype installation
  • Trainings/Workshops on DiGIR and IPT
  • Operates UDDI service
  • Supports several Cooperative agreements at Museum’s & Herbaria in US
gbif data portal
GBIF Data Portal

GBIF Site: http://data.gbif.org

U.S. Mirror: http://us.mirror.gbif.org

World:

- 201,275,468 occurrence records

- 318 data providers

USA:

- 83,607,198 records

- 91 data providers

web services to query gbif data
Web services to query GBIF data

OGC web services:

  • Taxon data service: http:// us.mirror.gbif.org/ws/rest/taxon
  • Occurrence record data service: http:// us.mirror.gbif.org/ws/rest/occurrence
  • Occurrence density data service: http:// us.mirror.gbif.org/ws/rest/density
  • Dataset metadata service: http:// us.mirror.gbif.org/ws/rest/resource
  • Data provider metadata service: http:// us.mirror.gbif.org/ws/rest/provider
  • Data network metadata service: http:// us.mirror.gbif.org/ws/rest/network
  • More information: http://wiki.gbif.org/dadiwiki/wikka.php?wakka=DeveloperAPIs
  • Web services to query US GBIF data (under development)
gbif data analysis and extractions for nbii partners
GBIF Data Analysis And Extractions for NBII Partners
  • Example GBIF Data Extractions:
    • Extract data for specific State(s), countries.
    • Extract data for list of species (plants, birds, butterflies etc..)
slide8
Web Services to Query US GBIF Data
  • Based on NBII CH/Lucene/Solr index
  • Species occurrences query
    • http://nbii-gbif.ornl.gov/us_solr/select?indent=on&version=2.2&q=scientific_name%3A%22Abildgaardia ovata%22&start=0&rows=100&fl=latitude%2Clongitude&qt=standard&wt=standard&explainOther=&hl.fl=
slide9
Simple Web Services Client to get occurrence counts

http://mercury.ornl.gov/gbifUtility/

slide10
Other NBII-GBIF services
  • GBIF collection metadata records (EML) are now available in the NBII metadata clearinghouse and in the NBII catalog search.
  • IPT prototype installation available in the NBII servers (for testing prupose)
slide14
Current and future tasks
  • Provide various easy-to-use visualization tools and web services for extracting NA GBIF data (local, state, regional, country, and thematic level)
  • Enable county level GBIF data visualization and extraction
  • Extend the collaboration activities with new projects such as USVH, DataONE etc..
  • Enable species mashups on the NBII metadata records
  • Evaluate broader services for all GBIF data
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