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Xiaogang (Marshall) Ma, Yu Chen, Han Wang, Patrick West, John Erickson, Peter Fox

DCO Early Career Scientist Workshop Feb 18-21 2014, San Jose, Costa Rica. Deep Earth Computer: A Platform for Linked Science of the Deep Carbon Observatory Community. Xiaogang (Marshall) Ma, Yu Chen, Han Wang, Patrick West, John Erickson, Peter Fox

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Xiaogang (Marshall) Ma, Yu Chen, Han Wang, Patrick West, John Erickson, Peter Fox

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  1. DCO Early Career Scientist Workshop Feb 18-21 2014, San Jose, Costa Rica Deep Earth Computer: A Platform for Linked Science of the Deep Carbon Observatory Community Xiaogang (Marshall) Ma, Yu Chen, Han Wang, Patrick West, John Erickson, Peter Fox Tetherless World Constellation Rensselaer Polytechnic Institute, Troy, NY, USA

  2. Do you use DOI to retrieve papers? • Do you use EndNote or Mendeley? • Do you have a ResearcherID or ORCiD? • Do you use ResearchGate or other social media? 2

  3. Data science combines aspects of informatics, data management, library science, computer science and physical science using cyberinfrastructure and information technology 3

  4. Data: opportunities and challenges 9/2008 3/2010 2/2011 10/2009 4

  5. 5

  6. Data: interoperability Interoperable: “Data should be discoverable, accessible, decodable, understandable and usable,and data sharing should be legal and ethical for all participants.” Ma, X. et al., 2011. Data exchange facilitated. Nature Geoscience, 4 (12), 814. 6

  7. Data science for DCO community Data Science Team withData Science Advisory Committee DCO Data Portal Engagement Team with Engagement Liaisons datacuration data publication & reuse data requirements DCO Secretariat Deep Life Reservoirs & Fluxes Deep Energy Physics & Chemistry Advancing the science of the Communities 7

  8. Deep Earth Computer • Provides these functions at minimum: • A concept model identifying and linking all key entities, agents and activities • A repository for datasets, publications, organizations, projects, etc. and associated metadata • Unique and powerful data and metadata visualization tools for the dissemination of information • Collaboration tools for scientific efforts • An integrated portal for diverse content and applications 8

  9. DCO ontology: a model for concept types and relationships vivo.cornell.edu VIVO - represents academic research communities DCO ontology extends the VIVO ontology 9

  10. Identify and annotate Information on the landing page of a dataset

  11. Linking to enable forward and backward tracking Landing page of Deep Energy Community 11

  12. Landing page of a person 12

  13. Repository for archiving datasets Archived datasets of ‘Noble gas isotope abundances in terrestrial fluids’ 13

  14. Tracing and repeatability: a topic of provenance Example: provenance of the sea level rise scenario Ma, X. et al., 2014. Capturing and presenting provenance of global change information. Nature Climate Change. In Press

  15. Visualized information viewing 15

  16. All information is linked and traceable! 16

  17. Collaboration tools Group Based Collaboration Group data deposit and reporting Listings of group content Group management and messaging

  18. Group bibliography Group shared calendar Group task management Group membership Group event management 18

  19. Research activities report dashboard: Results updated in real time as new member registered, new activities reported, new publication uploaded… 19

  20. View the disciplinary distribution of someone’s publications 20

  21. Boundary activities: establish data infrastructure interfaces International Geo Sample Number … … 21

  22. An integrated portal: deepcarbon.net If you do not have a ID for it, register now! 22

  23. Wrap-up • Deep Earth Computer • A platform for Linked Science of DCO Community • Promote collaborations • Improve openness and reproducibility of Carbon-related researches • Facilitate accreditation to resource contributors 23

  24. max7@rpi.edu Thank you!

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