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Using ATL/EMFTVM for import/export of medical data

Using ATL/EMFTVM for import/export of medical data. 8-Oct-2014 , Dennis Wagelaar. Import/export a common programming scenario. SuMEHR. SuMEHR. GPSMF. GPSMF. PMF. PMF. Corilus XML. Corilus XML. Corilus XML as pivot model. SuMEHR. GPSMF. Corilus XML. PMF. Corilus XML as pivot model.

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Using ATL/EMFTVM for import/export of medical data

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  1. Using ATL/EMFTVM for import/export of medical data 8-Oct-2014, Dennis Wagelaar

  2. Import/exporta common programming scenario SuMEHR SuMEHR GPSMF GPSMF PMF PMF Corilus XML Corilus XML

  3. Corilus XML as pivot model SuMEHR GPSMF Corilus XML PMF

  4. Corilus XML as pivot model SuMEHR GPSMF Corilus XML PMF

  5. Import/exportsimplified Corilus XML Corilus XML

  6. Why ATL?(ATL Transformation Language)

  7. Why EMFTVM?(EMF Transformation Virtual Machine)

  8. Why EMFTVM?(EMF Transformation Virtual Machine) https://wiki.eclipse.org/ATL/EMFTVM

  9. EMF vs. POJOs (JPA) Uses Uses EMF Models Plain Old Java Objects

  10. EMF vs. POJOsThis is what we have... (JPA) Uses Plain Old Java Objects

  11. From POJOs to EMFMoDisco and EMiFy Java Model Reverse Engineer Plain Old Java Objects

  12. From POJOs to EMFMoDisco and EMiFy EMiFy.atl Ecore Model Java Model

  13. From POJOs to EMFMoDisco and EMiFy Generate Model Ecore Model EMF Java Objects

  14. From POJOs to EMFMoDisco and EMiFy EMiFy.atl Generate Model Ecore Model Java Model Reverse Engineer EMF Java Objects

  15. Using ATL

  16. Using ATL

  17. Using ATLImplicit tracing

  18. Using ATLImplicit tracing

  19. Using ATLCollaboration Java developer Java developer Common: 178 lines of ATL code Import: 7283 lines of ATL code Export: 4617 lines of ATL code 4906 lines of Java import/export code .NET developer Java developer

  20. Runtime performance 03-10-2014 | 13:57:19,223 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.rs.ImportResource | Import partial document 504 03-10-2014 | 13:57:19,307 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Start full import for ... 03-10-2014 | 13:57:20,006 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Starting transformation... 03-10-2014 | 13:57:21,099 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.emftvm.impl.AbstractEMFTVMTransformer | Timing data: Loading finished at 0,000036 seconds (duration: 0,000036 seconds) Matching finished at 0,285989 seconds (duration: 0,285953 seconds) Applying finished at 1,091511 seconds (duration: 0,805522 seconds) Post-applying finished at 1,091712 seconds (duration: 0,000201 seconds) Recursive stage finished at 1,091751 seconds (duration: 0,000039 seconds) Execution finished at 1,091915 seconds (duration: 0,000203 seconds) 03-10-2014 | 13:57:21,118 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 1 Patient instances 03-10-2014 | 13:57:21,155 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 3 ExternalUser instances 03-10-2014 | 13:57:21,156 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 1 HealthInsurance instances 03-10-2014 | 13:57:21,161 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 138 Contact instances 03-10-2014 | 13:57:21,282 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 33 Episode instances 03-10-2014 | 13:57:21,316 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 33 HealthApproach instances 03-10-2014 | 13:57:21,349 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 553 SubContact instances 03-10-2014 | 13:57:21,925 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 2 ContactPerson instances 03-10-2014 | 13:57:23,240 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 1 Vaccination instances 03-10-2014 | 13:57:23,255 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 134 NormalMedicationEntry instances 03-10-2014 | 13:57:23,649 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 4 MagistralMedicationEntry instances 03-10-2014 | 13:57:23,673 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 138 FreeTextPosology instances 03-10-2014 | 13:57:24,041 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 224 SOEPRule instances 03-10-2014 | 13:57:24,473 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 78 Letter instances 03-10-2014 | 13:57:25,416 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 30 LabResult instances 03-10-2014 | 13:57:25,495 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 776 LabResultEntry instances 03-10-2014 | 13:57:28,533 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 51 ParameterGroup instances 03-10-2014 | 13:57:28,657 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 72 ParameterGroupEntry instances 03-10-2014 | 13:57:28,992 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 3 SickLeave instances 03-10-2014 | 13:57:29,023 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.services.impl.CorilusXMLImportServiceImpl | Processing 2 Note instances 03-10-2014 | 13:57:33,992 | INFO | http-0.0.0.0-8080-4 | be.healthconnect.emr.server.rs.ImportResource | Finished import partial document 504 in 14.768414891 Medium-large patient file (2277 record entries)

  21. ConclusionWe tackled a complex and common programming scenario such as import/export by breaking it up in three ways: XML

  22. Questions Questions? ? http://www.healthconnect.be/ http://www.corilus.be/ http://www.careconnect.be/

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