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Genome-wide co-occurrence tendencies

A. B. Genome-wide co-occurrence tendencies. Co-occurrences in co-regulated gene sets. Genome-wide set of promoter sequences. PWM set. Promoter sequences of co-regulated gene set. PWM set. TSS. TSS. etc. etc. Predicted TFBSs. TSS. Predicted TFBSs. TSS. Over-represented TFBSs.

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Genome-wide co-occurrence tendencies

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  1. A B Genome-wide co-occurrence tendencies Co-occurrences in co-regulated gene sets Genome-wide set of promoter sequences PWM set Promoter sequences of co-regulated gene set PWM set TSS TSS etc. etc. Predicted TFBSs TSS Predicted TFBSs TSS Over-represented TFBSs ORI p-value < 0.01 FR values Genomic FR values Over-represented PWMs vs all PWMs All PWMs vs all PWMs FR( | ) FR( | ) FR( | ) FR( | ) FR( | ) FR( | ) FR( | ) etc. random sampling FR p-values Genome-wide tendencies Significantly co-occurrences Difference in GC content Frequency FR( | ) log2(frequency ratio) log2(frequency ratio)

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