Cicc web services and issues
Download
1 / 7

CICC Web services and Issues - PowerPoint PPT Presentation


  • 59 Views
  • Uploaded on

CICC Web services and Issues. Jungkee (Jake) Kim Community Grids Laboratory. CICC Web Services I. BCI Clustering Provides Bernard Chemical Information (BCI) clustering packages A module of the workflow for HTS data organization and flagging Status:

loader
I am the owner, or an agent authorized to act on behalf of the owner, of the copyrighted work described.
capcha
Download Presentation

PowerPoint Slideshow about ' CICC Web services and Issues' - guillaume-jair


An Image/Link below is provided (as is) to download presentation

Download Policy: Content on the Website is provided to you AS IS for your information and personal use and may not be sold / licensed / shared on other websites without getting consent from its author.While downloading, if for some reason you are not able to download a presentation, the publisher may have deleted the file from their server.


- - - - - - - - - - - - - - - - - - - - - - - - - - E N D - - - - - - - - - - - - - - - - - - - - - - - - - -
Presentation Transcript
Cicc web services and issues

CICC Web services and Issues

Jungkee (Jake) Kim

Community Grids Laboratory


Cicc web services i
CICC Web Services I

  • BCI Clustering

    • Provides Bernard Chemical Information (BCI) clustering packages

    • A module of the workflow for HTS data organization and flagging

    • Status:

      • Added URL output support to the previous solid prototype (Multi-user durable)

      • Taverna Beanshell Scripting for data format adjusting (e.g. Filtering out the head part listing column names)

    • To do: Evaluating the URI(URL) based workflow design

  • ToxTree

    • Estimates toxic hazard by applying a decision tree approach

    • A module of the workflow for HTS data organization and flagging

    • Status: A test prototype producing the level of toxicity in a brief or verbose explanation against a SMILE structure

    • To do:

      • Refining the Web service for cluster input and external property support

      • The Taverna Beanshell scripting for data merging not used in some modules


Cicc web services ii
CICC Web Services II

  • Workflow for HTS data organization and flagging

    • Demonstrates how screening data can be flagged and organized for human analysis

    • Status: Individual modules except the visualization are in prototype

    • To do:

      • Defining at least XML schema or DTD for the workflow data (at most the Ontology)

      • Redefining current workflow model to reflect the new feature of Taverna 1.4 supporting complex data structures and the provenance plugin

  • Other Planed Web Services

    • Open Source Chemistry Analysis Routines (OSCAR)

      • Extracts chemical information from text and produces an XML instance highlighting the chemical information

      • A module of the PMR workflow

      • Status: OSCAR3 is available and works fine as a Java application

      • To do: Studying XML instances for extracting chemical names





Diagram of workflow2
Diagram of Workflow2

Input/Output

Web Services

Beanshell Scripting